Evidence map›Paper›PMID 36116108›Full record

ArticleBioEssays : news and reviews in molecular, cellular and developmental biology2022

Unexpected new insights into DNA clamp loaders: Eukaryotic clamp loaders contain a second DNA site for recessed 5' ends that facilitates repair and signals DNA damage: Eukaryotic clamp loaders contain a second DNA site for recessed 5' ends that facilitates repair and signals DNA damage.

Huilin Li, Mike O'Donnell, Brian Kelch

Open access · greenAbstract read
In one paragraph

Article in BioEssays : news and reviews in molecular, cellular and developmental biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 17 citations in OpenAlex.

  1. Mechanistic diversity of clamp loading at small DNA gaps.The Journal of biological chemistry · 2026
    Review
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  4. ThebioRxiv : the preprint server for biology · 2026
    Article
  5. Article
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  8. Article
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  11. Cryo-EM reveals a nearly complete PCNA loading process and unique features of the human alternative clamp loader CTF18-RFC.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
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  14. Differences in clamp loader mechanism between bacteria and eukaryotes.bioRxiv : the preprint server for biology · 2023
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Huilin LiDepartment of Structural Biology, Van Andel Institute, Grand Rapids, Michigan, USA.
Mike O'DonnellDNA Replication Laboratory, The Rockefeller University, New York, New York, USA.ORCID 0000-0001-9002-4214
Brian KelchDepartment of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, USA.
Howard Hughes Medical Institute · USUniversity of Massachusetts Chan Medical School · USVan Andel Institute · US

Funding

Structural mechanism of DNA replicationR35GM131754 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI Huilin Li · 2019 to 2026
$6.0M
Biochemical Mechanism and Structure of the Eukaryotic Replication ForkR01GM115809 · NIGMS · ROCKEFELLER UNIVERSITY · PI O'DONNELL, MICHAEL E · 2015 to 2022
$2.6M
Structural mechanisms of sliding clamp loader ATPasesR01GM127776 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI KELCH, BRIAN ANTHONY · 2019 to 2023
$1.8M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM115809NIGMS NIH HHS R01 GM127776NIGMS NIH HHS R35 GM131754
6 · The paper itself

Abstract

Clamp loaders are pentameric AAA+ assemblies that use ATP to open and close circular DNA sliding clamps around DNA. Clamp loaders show homology in all organisms, from bacteria to human. The eukaryotic PCNA clamp is loaded onto 3' primed DNA by the replication factor C (RFC) hetero-pentameric clamp loader. Eukaryotes also have three alternative RFC-like clamp loaders (RLCs) in which the Rfc1 subunit is substituted by another protein. One of these is the yeast Rad24-RFC (Rad17-RFC in human) that loads a 9-1-1 heterotrimer clamp onto a recessed 5' end of DNA. Recent structural studies of Rad24-RFC have discovered an unexpected 5' DNA binding site on the outside of the clamp loader and reveal how a 5' end can be utilized for loading the 9-1-1 clamp onto DNA. In light of these results, new studies reveal that RFC also contains a 5' DNA binding site, which functions in gap repair. These studies also reveal many new features of clamp loaders. As reviewed herein, these recent studies together have transformed our view of the clamp loader mechanism.

Indexed as

DNA DamageSaccharomyces cerevisiae ProteinsAdenosine TriphosphateCell Cycle ProteinsDNADNA-Binding ProteinsDNA, CircularDNA ReplicationHumansNuclear ProteinsProliferating Cell Nuclear AntigenReplication Protein CSaccharomyces cerevisiaeAdenosine TriphosphateCell Cycle ProteinsDNADNA-Binding ProteinsDNA, CircularNuclear ProteinsProliferating Cell Nuclear AntigenRad17 protein, humanRAD17 protein, S cerevisiaeReplication Protein CRFC1 protein, S cerevisiaeSaccharomyces cerevisiae Proteins9-1-1 clampAAA+ oligomersclamp loaderDNA repairDNA replicationPCNA clampsliding clamp

Identifiers

PMID36116108
PMCPMC9927785
OpenAlexW4296240302

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.