Evidence map›Paper›PMID 36115937›Full record

ArticleBMC immunology2022

GBP2 acts as a member of the interferon signalling pathway in lupus nephritis.

Yuan Zhang, Yinping Liao, Qing Hang, Dong Sun, Ya Liu

Open access · goldAbstract read
In one paragraph

Article in BMC immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Type I IFN in Glomerular Disease: Scarring beyond the STING.International journal of molecular sciences · 2024
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yuan ZhangDepartment of Nephrology, The Affiliated Hospital of Xuzhou Medical University, No. 99, West Huaihai Road, Xuzhou, 221004, Jiangsu, China.
Yinping LiaoDepartment of Nephrology, The Affiliated Hospital of Xuzhou Medical University, No. 99, West Huaihai Road, Xuzhou, 221004, Jiangsu, China.
Qing HangDepartment of Nephrology, The Affiliated Hospital of Xuzhou Medical University, No. 99, West Huaihai Road, Xuzhou, 221004, Jiangsu, China.
Dong SunDepartment of Nephrology, The Affiliated Hospital of Xuzhou Medical University, No. 99, West Huaihai Road, Xuzhou, 221004, Jiangsu, China.
Ya LiuDepartment of Nephrology, The Affiliated Hospital of Xuzhou Medical University, No. 99, West Huaihai Road, Xuzhou, 221004, Jiangsu, China. 770020213931@xzhmu.edu.cn.
Xuzhou Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lupus nephritis (LN) is a common and serious clinical manifestation of systemic lupus erythematosus. However, the pathogenesis of LN is not fully understood. The currently available treatments do not cure the disease and appear to have a variety of side effects in the long term. The purpose of this study was to search for key molecules involved in the LN immune response through bioinformatics techniques to provide a reference for LN-specific targeted therapy. The GSE112943 dataset was downloaded from the Gene Expression Omnibus database, and 20 of the samples were selected for analysis. In total, 2330 differentially expressed genes were screened. These genes were intersected with a list of immune genes obtained from the IMMPORT immune database to obtain 128 differentially expressed immune-related genes. Enrichment analysis showed that most of these genes were enriched in the interferon signalling pathway. Gene set enrichment analysis revealed that the sample was significantly enriched for expression of the interferon signalling pathway. Further analysis of the core gene cluster showed that nine genes, GBP2, VCAM1, ADAR, IFITM1, BST2, MX2, IRF5, OAS1 and TRIM22, were involved in the interferon signalling pathway. According to our analysis, the guanylate binding protein 2 (GBP2), interferon regulatory factor 5 and 2'-5'-oligoadenylate synthetase 1 (OAS1) genes are involved in three interferon signalling pathways. At present, we do not know whether GBP2 is associated with LN. Therefore, this study focused on the relationship between GBP2 and LN pathogenesis. We speculate that GBP2 may play a role in the pathogenesis of LN as a member of the interferon signalling pathway. Further immunohistochemical results showed that the expression of GBP2 was increased in the renal tissues of LN patients compared with the control group, confirming this conjecture. In conclusion, GBP2 is a member of the interferon signalling pathway that may have implications for the pathogenesis of LN and serves as a potential biomarker for LN.

Indexed as

GTP-Binding ProteinsInterferonsLupus NephritisAntiviral AgentsBiomarkersHumansInterferon Regulatory FactorsLigasesSignal TransductionAntiviral AgentsBiomarkersGBP2 protein, humanGTP-Binding ProteinsInterferon Regulatory FactorsInterferonsLigasesGSEAInterferonLupus nephritis (LN)Protein‐protein interaction

Identifiers

PMID36115937
PMCPMC9482746
OpenAlexW4296184687

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.