Evidence map›Paper›PMID 36115925›Full record

ArticleCommunications biology2022

SPACA6 ectodomain structure reveals a conserved superfamily of gamete fusion-associated proteins.

Tyler D R Vance, Patrick Yip, Elisabet Jiménez, Sheng Li, Diana Gawol, James Byrnes, Isabel Usón, Ahmed Ziyyat, Jeffrey E Lee

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
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  4. Characterization ofbioRxiv : the preprint server for biology · 2026
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  10. Allosteric inhibition of the IZUMO1-JUNO fertilization complex by the naturally occurring antisperm antibody OBF13.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
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  13. Review
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  16. Article
  17. Human sperm TMEM95 binds eggs and facilitates membrane fusion.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Tyler D R VanceDepartment of Laboratory Medicine and Pathobiology, Temerty Faculty of Medicine, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-7637-5891
Patrick YipDepartment of Laboratory Medicine and Pathobiology, Temerty Faculty of Medicine, University of Toronto, Toronto, ON, Canada.
Elisabet JiménezInstitute of Molecular Biology of Barcelona (IBMB-CSIC), 08028, Barcelona, Spain.ORCID 0000-0001-7521-8619
Sheng LiDepartment of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-9073-6809
Diana GawolDepartment of Laboratory Medicine and Pathobiology, Temerty Faculty of Medicine, University of Toronto, Toronto, ON, Canada.
James ByrnesNational Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY, USA.
Isabel UsónInstitute of Molecular Biology of Barcelona (IBMB-CSIC), 08028, Barcelona, Spain.
Ahmed ZiyyatUniversité Paris Cité, CNRS, INSERM, Institut Cochin, F-75014, Paris, France.ORCID 0000-0001-9724-3831
Jeffrey E LeeDepartment of Laboratory Medicine and Pathobiology, Temerty Faculty of Medicine, University of Toronto, Toronto, ON, Canada. jeff.lee@utoronto.ca.ORCID 0000-0002-2172-6586
University of Toronto · CABrookhaven National Laboratory · USCentre National de la Recherche Scientifique · FRInstitució Catalana de Recerca i Estudis Avançats · ESInstitut de Biologia Molecular de Barcelona · ESUniversity of California San Diego · US

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI MALCOLM S. CAPEL · 2018 to 2026
$34.2M
CIHR PJT-153281NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P30 GM133893
6 · The paper itself

Abstract

SPACA6 is a sperm-expressed surface protein that is critical for gamete fusion during mammalian sexual reproduction. Despite this fundamental role, little is known about how SPACA6 specifically functions. We elucidated the crystal structure of the SPACA6 ectodomain at 2.2-Å resolution, revealing a two-domain protein containing a four-helix bundle and Ig-like β-sandwich connected via a quasi-flexible linker. This structure is reminiscent of IZUMO1, another gamete fusion-associated protein, making SPACA6 and IZUMO1 founding members of a superfamily of fertilization-associated proteins, herein dubbed the IST superfamily. The IST superfamily is defined structurally by its distorted four-helix bundle and a pair of disulfide-bonded CXXC motifs. A structure-based search of the AlphaFold human proteome identified more protein members to this superfamily; remarkably, many of these proteins are linked to gamete fusion. The SPACA6 structure and its connection to other IST-superfamily members provide a missing link in our knowledge of mammalian gamete fusion.

Indexed as

Acrosome ReactionMembrane ProteinsSpermatozoaAnimalsDisulfidesGerm CellsHumansImmunoglobulinsMaleMammalsProteomeSemenDisulfidesImmunoglobulinsMembrane ProteinsProteome

Identifiers

PMID36115925
PMCPMC9482655
OpenAlexW4296139751

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.