Evidence map›Paper›PMID 36115649›Full record

Observational studyClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases2023

RNA loads of severe acute respiratory syndrome coronavirus 2 in patients with breakthrough coronavirus disease 2019 caused by the Delta and Omicron variants.

Paula de Michelena, Ignacio Torres, Enric-Cuevas Ferrando, Beatriz Olea, Fernando González-Candelas, Gloria Sánchez, David Navarro

Open access · greenAbstract readObservational Study
In one paragraph

Observational study in Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Paula de MichelenaMicrobiology Service, Clinic University Hospital, Instituto de Investigación Sanitaria Hospital Clínico Valencia Health Research Institute, Valencia, Spain.
Ignacio TorresMicrobiology Service, Clinic University Hospital, Instituto de Investigación Sanitaria Hospital Clínico Valencia Health Research Institute, Valencia, Spain.
Enric-Cuevas FerrandoDepartment of Preservation and Food Safety Technologies, Institute of Agrochemistry and Food Technology, Instituto de Agroquímica y Tecnología de Alimentos-Centyro Superior de Investigaciones Científicas, Valencia, Spain.
Beatriz OleaMicrobiology Service, Clinic University Hospital, Instituto de Investigación Sanitaria Hospital Clínico Valencia Health Research Institute, Valencia, Spain.
Fernando González-CandelasJoint Research Unit Infection and Public Health Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana-University of Valencia, Institute for Integrative Systems Biology (I2SysBio, Universitat de València-Centyro Superior de Investigaciones Científicas) and Centro de Investigación Biomédica en Red in Epidemiology and Public Health, Valencia, Spain.
Gloria SánchezDepartment of Preservation and Food Safety Technologies, Institute of Agrochemistry and Food Technology, Instituto de Agroquímica y Tecnología de Alimentos-Centyro Superior de Investigaciones Científicas, Valencia, Spain.
David NavarroMicrobiology Service, Clinic University Hospital, Instituto de Investigación Sanitaria Hospital Clínico Valencia Health Research Institute, Valencia, Spain; Department of Microbiology, School of Medicine, University of Valencia, Valencia, Spain. Electronic address: david.navarro@uv.es.
INCLIVA Health Research Institute · ESInstituto de Agroquímica y Tecnología de Alimentos · ESUniversitat de València · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesTo compare the RNA loads of severe acute respiratory syndrome coronavirus 2 in nasopharyngeal specimens collected from patients with breakthrough coronavirus disease 2019 (COVID-19) caused by the Delta variant with those in specimens collected from patients with breakthrough COVID-19 caused by the Omicron variant.

methodsA retrospective, observational study was conducted, including 240 consecutive adult out-patients, of whom 121 (74 females; median age, 40 years) had COVID-19 due to the Omicron variant and 119 (65 females; median age, 48 years) had COVID-19 caused by the Delta variant. The viral RNA load was quantitated using the TaqPath COVID-19 Combo Kit (Thermo Fisher Scientific, Waltham, MS, USA). The viability platinum chloride reverse transcription-PCR assay was used to discriminate between potentially infectious viral particles and free (encapsidated) viral RNA.

resultsOverall, the viral RNA loads were significantly higher (p 0.003) for the Omicron variant (median, 8.1 log

conclusionThe time elapsed since vaccination has a major impact on the RNA loads of severe acute respiratory syndrome coronavirus 2 in nasopharyngeal specimens, particularly for the Omicron variant. The Omicron variant may be better adapted for replication in the upper respiratory tract than the Delta variant, in which this is unlikely given its more efficient generation of viral particles.

Indexed as

COVID-19SARS-CoV-2AdultFemaleHumansMiddle AgedPlatinum CompoundsRetrospective StudiesRNA, Viralplatinum chloridePlatinum CompoundsRNA, ViralCOVID-19Delta variantInfectious viral loadOmicron variantSARS-CoV-2SARS-CoV-2 RNA loadViability RT-PCR assay

Identifiers

PMID36115649
PMCPMC9474403
OpenAlexW4295806015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.