Evidence map›Paper›PMID 36112544›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2022

Multi-omic Characterization of Pancreatic Ductal Adenocarcinoma Relates CXCR4 mRNA Expression Levels to Potential Clinical Targets.

Florian Kocher, Alberto Puccini, Gerold Untergasser, Agnieszka Martowicz, Kai Zimmer, Andreas Pircher, Yasmine Baca, Joanne Xiu, Johannes Haybaeck, Piotr Tymoszuk and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 13 institutions in 4 countries.

Florian KocherDepartment of Internal Medicine V (Hematology and Oncology), Comprehensive Cancer Center Innsbruck (CCCI), Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-1027-4609
Alberto PucciniMedical Oncology Unit 1, Ospedale Policlinico San Martino, Genoa, Italy.ORCID 0000-0002-2492-4043
Gerold UntergasserDepartment of Internal Medicine V (Hematology and Oncology), Comprehensive Cancer Center Innsbruck (CCCI), Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-3430-119X
Agnieszka MartowiczDepartment of Internal Medicine V (Hematology and Oncology), Comprehensive Cancer Center Innsbruck (CCCI), Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-5781-9995
Kai ZimmerDepartment of Internal Medicine V (Hematology and Oncology), Comprehensive Cancer Center Innsbruck (CCCI), Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-1357-8712
Andreas PircherDepartment of Internal Medicine V (Hematology and Oncology), Comprehensive Cancer Center Innsbruck (CCCI), Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-7747-3012
Yasmine BacaCaris Life Sciences, Phoenix, Arizona.ORCID 0000-0003-2130-0611
Joanne XiuCaris Life Sciences, Phoenix, Arizona.ORCID 0000-0001-8744-5827
Johannes HaybaeckInstitute of Pathology, Neuropathology and Molecular Pathology, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0001-5518-3359
Piotr TymoszukData Analytics As a Service Tirol (DAAS) Tirol, Innsbruck, Austria.ORCID 0000-0002-0398-6034
Richard M GoldbergWest Virginia University Cancer Institute, Morgantown, West Virginia.ORCID 0000-0003-0308-8223
Angelica PetrilloMedical Oncology Unit, Ospedale del Mare, Naples, Italy.ORCID 0000-0001-5489-5733
Anthony F ShieldsDepartment of Oncology, Karmanos Cancer Institute, Wayne State University, Detroit, Michigan.ORCID 0000-0002-9122-1014
Mohamed E SalemLevine Cancer Institute, Carolinas HealthCare System, Charlotte, North Carolina.ORCID 0000-0002-3661-6785
John L MarshallRuesch Center for The Cure of Gastrointestinal Cancers, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, DC.ORCID 0000-0002-3449-2344
Michael HallDepartment of Hematology and Oncology, Fox Chase Cancer Center, Temple University Health System, Philadelphia, Pennsylvania.ORCID 0000-0003-4515-3409
W Michael KornCaris Life Sciences, Phoenix, Arizona.ORCID 0000-0002-0124-6841
Chadi NabhanCaris Life Sciences, Phoenix, Arizona.ORCID 0000-0002-4316-7826
Francesca BattaglinDivision of Medical Oncology, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, California.ORCID 0000-0002-9869-0163
Heinz-Josef LenzDivision of Medical Oncology, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, California.ORCID 0000-0003-2178-9568
Emil LouDivision of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, Minnesota.ORCID 0000-0002-1607-1386
Su-Pin ChooCurie Oncology, Mount Elizabeth Novena Specialist Centre, Singapore.ORCID 0000-0002-8925-3922
Chee-Keong TohCurie Oncology, Mount Elizabeth Novena Specialist Centre, Singapore.ORCID 0000-0002-5691-6144
Silvia GasteigerDepartment of Visceral, Transplant and Thoracic Surgery, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-5640-0893
Renate PichlerDepartment of Urology, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0001-5286-9048
Dominik WolfDepartment of Internal Medicine V (Hematology and Oncology), Comprehensive Cancer Center Innsbruck (CCCI), Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-4761-075X
Andreas SeeberDepartment of Internal Medicine V (Hematology and Oncology), Comprehensive Cancer Center Innsbruck (CCCI), Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0001-8529-7824
Innsbruck Medical University · ATCaris Life Sciences (United States) · USMount Elizabeth Novena Hospital · SGUniversity of Southern California · USCarolinas Healthcare System · USGeorgetown University · USOspedale D. Cotugno · ITOspedale Policlinico San Martino · ITTemple University Health System · USThe Barbara Ann Karmanos Cancer Institute · USTirol Kliniken · ATUniversity of Minnesota · USWest Virginia University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeChemokines are essential for immune cell trafficking and are considered to have a major impact on the composition of the tumor microenvironment. CX-chemokine receptor 4 (CXCR4) is associated with poor differentiation, metastasis, and prognosis in pancreatic ductal adenocarcinoma (PDAC). This study provides a comprehensive molecular portrait of PDAC according to CXCR4 mRNA expression levels. EXPERIMENTAL

designThe Cancer Genome Atlas database was used to explore molecular and immunologic features associated with CXCR4 mRNA expression in PDAC. A large real-word dataset (n = 3,647) served for validation and further exploratory analyses. Single-cell RNA analyses on a publicly available dataset and in-house multiplex immunofluorescence (mIF) experiments were performed to elaborate cellular localization of CXCR4.

resultsHigh CXCR4 mRNA expression (CXCR4high) was associated with increased infiltration of regulatory T cells, CD8+ T cells, and macrophages, and upregulation of several immune-related genes, including immune checkpoint transcripts (e.g., TIGIT, CD274, PDCD1). Analysis of the validation cohort confirmed the CXCR4-dependent immunologic TME composition in PDAC irrespective of microsatellite instability-high/mismatch repair-deficient or tumor mutational burden. Single-cell RNA analysis and mIF revealed that CXCR4 was mainly expressed by macrophages and T-cell subsets. Clinical relevance of our finding is supported by an improved survival of CXCR4high PDAC.

conclusionsHigh intratumoral CXCR4 mRNA expression is linked to a T cell- and macrophage-rich PDAC phenotype with high expression of inhibitory immune checkpoints. Thus, our findings might serve as a rationale to investigate CXCR4 as a predictive biomarker in patients with PDAC undergoing immune checkpoint inhibition.

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsHumansReceptors, ChemokineReceptors, CXCR4RNARNA, MessengerTumor MicroenvironmentCXCR4 protein, humanReceptors, ChemokineReceptors, CXCR4RNARNA, Messenger

Identifiers

PMID36112544
PMCPMC9660543
OpenAlexW4296030055

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.