ArticleMolecular ecology2022
Linked selection, differential introgression and recombination rate variation promote heterogeneous divergence in a pair of yellow croakers.
Article in Molecular ecology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13 citing papers in PubMed, 37 citations in OpenAlex.
- Transposons drove the evolution of a male sex-determining gene from a female gene with deep introgression across cichlids.Science advances · 2026Article
- Methylation-associated mutagenesis underlies variation in the mutation spectrum across eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Divergent selection, recombination variability, and noncoding introgression drive speciation and adaptation in threadfin Eleutheronema.Communications biology · 2025Article
- First development of a 100 K SNP array for small yellow croaker and its application in genomic selection for growth and disease resistance.BMC genomics · 2025Article
- Exploring evolutionary mechanisms of genomic divergence in marine intertidal limpets.Heredity · 2025Article
- Methylation-associated mutagenesis underlies variation in the mutation spectrum across eukaryotes.bioRxiv : the preprint server for biology · 2025Article
- Chromosome-level genome assembly of the small yellow croaker, Larimichthys polyactis (Perciformes: Sciaenidae).Scientific data · 2025Article
- Chromosome-level genome assembly and annotation of Japanese anchovy (Engraulis japonicus).Scientific data · 2025Article
- Conserved islands of divergence associated with adaptive variation in sockeye salmon are maintained by multiple mechanisms.Molecular ecology · 2024Article
- Characterising the Genomic Landscape of Differentiation Between Annual and Perennial Rye.Evolutionary applications · 2024Article
- Museum Skins Enable Identification of Introgression Associated with Cytonuclear Discordance.Systematic biology · 2024Article
- Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring.BMC genomics · 2024Article
- Linked selection, differential introgression and recombination rate variation promote heterogeneous divergence in a pair of yellow croakers.Molecular ecology · 2022Article
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Understanding the mechanisms underlying heterogeneous genomic divergence is of particular interest in evolutionary biology. Highly differentiated genomic regions, known as genomic islands, often evolve between diverging lineages. These genomic islands may be related to selection promoting adaptation or reproductive isolation. Based on whole genome assembly and genome-wide RAD sequencing in a pair of yellow croakers (genus: Larimichthys), we investigated the evolutionary processes shaping genomic landscapes of divergence. Demographic modelling indicated that the two species diverged following a secondary contact scenario, where differential introgression and linked selection were suggested to be involved in heterogeneous genomic divergence. We identified reduced recombination rate in genomic islands and a relatively good conservation of both genetic diversity and recombination landscapes between species, which highlight the roles of linked selection and recombination rate variation in promoting heterogeneous divergence in the common ancestral lineage of the two species. In addition, we found a positive correlation between differentiation (F
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