Evidence map›Paper›PMID 36109649›Full record

ArticleNature chemical biology2022

Diene incorporation by a dehydratase domain variant in modular polyketide synthases.

Christian Hobson, Matthew Jenner, Xinyun Jian, Daniel Griffiths, Douglas M Roberts, Matias Rey-Carrizo, Gregory L Challis

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 5 countries.

Christian Hobson *Department of Chemistry, University of Warwick, Coventry, UK.ORCID 0000-0003-2584-0965
Matthew Jenner *Department of Chemistry, University of Warwick, Coventry, UK.ORCID 0000-0003-2317-3011
Xinyun JianDepartment of Chemistry, University of Warwick, Coventry, UK.
Daniel GriffithsDepartment of Chemistry, University of Warwick, Coventry, UK.
Douglas M RobertsDepartment of Chemistry, University of Warwick, Coventry, UK.
Matias Rey-CarrizoDepartment of Chemistry, University of Warwick, Coventry, UK.
Gregory L ChallisDepartment of Chemistry, University of Warwick, Coventry, UK. G.L.Challis@warwick.ac.uk.ORCID 0000-0001-5976-3545
University of Warwick · GBAustralian Regenerative Medicine Institute · AUDiscovery Institute · US

Funding

Biotechnology and Biological Sciences Research Council BB/K002341/1Biotechnology and Biological Sciences Research Council BB/L021692/1Biotechnology and Biological Sciences Research Council BB/M017982/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/R012121/1
6 · The paper itself

Abstract

Modular polyketide synthases (PKSs) are biosynthetic assembly lines that construct structurally diverse natural products with wide-ranging applications in medicine and agriculture. Various mechanisms contribute to structural diversification during PKS-mediated chain assembly, including dehydratase (DH) domain-mediated elimination of water from R and S-configured 3-hydroxy-thioesters to introduce E- and Z-configured carbon-carbon double bonds, respectively. Here we report the discovery of a DH domain variant that catalyzes the sequential elimination of two molecules of water from a (3R, 5S)-3,5-dihydroxy thioester during polyketide chain assembly, introducing a conjugated E,Z-diene into various modular PKS products. We show that the reaction proceeds via a (2E, 5S)-2-enoyl-5-hydroxy-thioester intermediate and involves an additional universally conserved histidine residue that is absent from the active site of most conventional DH domains. These findings expand the diverse range of chemistries mediated by DH-like domains in modular PKSs, highlighting the catalytic versatility of the double hotdog fold.

Indexed as

PolyketidesPolyketide SynthasesCarbonHydro-LyasesPolyenesSubstrate SpecificityWaterCarbonHydro-LyasesPolyenesPolyketidesPolyketide SynthasesWater

Identifiers

PMID36109649
PMCPMC7613849
OpenAlexW4296037792

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.