Evidence map›Paper›PMID 36109497›Full record

ArticleNature communications2022

Transcriptional dynamics of murine motor neuron maturation in vivo and in vitro.

Tulsi Patel, Jennifer Hammelman, Siaresh Aziz, Sumin Jang, Michael Closser, Theodore L Michaels, Jacob A Blum, David K Gifford, Hynek Wichterle

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 44 citations in OpenAlex.

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  15. Histone bivalency in CNS development.Genes & development · 2025
    Review
  16. Article
  17. Cis-regulatory elements driving motor neuron-selective viral payload expression within the mammalian spinal cord.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Tulsi PatelDepartments of Pathology & Cell Biology, Neuroscience, and Neurology, Columbia University Irving Medical Center, New York, NY, 10032, USA. tp2308@cumc.columbia.edu.
Jennifer HammelmanComputer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, 02139, USA.
Siaresh AzizDepartments of Pathology & Cell Biology, Neuroscience, and Neurology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Sumin JangDepartments of Pathology & Cell Biology, Neuroscience, and Neurology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Michael ClosserDepartments of Pathology & Cell Biology, Neuroscience, and Neurology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Theodore L MichaelsDepartments of Pathology & Cell Biology, Neuroscience, and Neurology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Jacob A BlumDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
David K GiffordComputer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, 02139, USA.
Hynek WichterleDepartments of Pathology & Cell Biology, Neuroscience, and Neurology, Columbia University Irving Medical Center, New York, NY, 10032, USA. hw350@columbia.edu.ORCID 0000-0002-7817-0080
Columbia University Irving Medical Center · USStanford University · US

Funding

Training Program in Basic NeuroscienceT32MH020016 · NIMH · STANFORD UNIVERSITY · PI Justin L Gardner, Merritt C Maduke · 1997 to 2026
$16.2M
Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Translational Neuroscience Training Grant.T32MH015174 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DENNY, CHRISTINE ANN · 1985 to 2020
$4.0M
Distal enhancers controlling motor neuron gene expression programR01NS109217 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WICHTERLE, HYNEK · 2019 to 2022
$2.1M
Transcriptional Control of Motor Neuron MaturationR01NS116141 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WICHTERLE, HYNEK · 2020 to 2024
$1.9M
Defining motor neuron diversity from embryo to adulthood and generating tools for in vivo and in vitro accessK99NS121136 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PATEL, TULSI · 2021 to 2022
$272k
Defining the transcriptional regulation of motor neuron maturation in vivo and in vitroF32NS105372 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PATEL, TULSI · 2017 to 2018
$100k
NIGMS NIH HHS T32 GM087237NIMH NIH HHS T32 MH015174NIMH NIH HHS T32 MH020016NINDS NIH HHS F32 NS105372NINDS NIH HHS K99 NS121136NINDS NIH HHS R01 NS109217NINDS NIH HHS R01 NS116141
6 · The paper itself

Abstract

Neurons born in the embryo can undergo a protracted period of maturation lasting well into postnatal life. How gene expression changes are regulated during maturation and whether they can be recapitulated in cultured neurons remains poorly understood. Here, we show that mouse motor neurons exhibit pervasive changes in gene expression and accessibility of associated regulatory regions from embryonic till juvenile age. While motifs of selector transcription factors, ISL1 and LHX3, are enriched in nascent regulatory regions, motifs of NFI factors, activity-dependent factors, and hormone receptors become more prominent in maturation-dependent enhancers. Notably, stem cell-derived motor neurons recapitulate ~40% of the maturation expression program in vitro, with neural activity playing only a modest role as a late-stage modulator. Thus, the genetic maturation program consists of a core hardwired subprogram that is correctly executed in vitro and an extrinsically-controlled subprogram that is dependent on the in vivo context of the maturing organism.

Indexed as

Motor NeuronsNeurogenesisAnimalsHormonesLIM-Homeodomain ProteinsMiceTranscription FactorsTranscription, GeneticHormonesLIM-Homeodomain ProteinsTranscription Factors

Identifiers

PMID36109497
PMCPMC9477853
OpenAlexW4296036674

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.