Evidence map›Paper›PMID 36108048›Full record

ArticleScience (New York, N.Y.)2022

Hallucinating symmetric protein assemblies.

B I M Wicky, L F Milles, A Courbet, R J Ragotte, J Dauparas, E Kinfu, S Tipps, R D Kibler, M Baek, F DiMaio and 6 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
19.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 240 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Predicting membrane protein localization by deep learning on structure and chemistry.Protein science : a publication of the Protein Society · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Applications and limitations of AI tools in enzyme design.Protein science : a publication of the Protein Society · 2026
    Review
  9. Article
  10. Review
  11. Article
  12. Limitations of the refolding pipeline for de novo protein design.Protein science : a publication of the Protein Society · 2026
    Article
  13. Stabilizing Plasmodium falciparum proteins for small molecule drug discovery.Protein science : a publication of the Protein Society · 2026
    Article
  14. Article
  15. Article
  16. Chemical reviews · 2026
    Review
  17. Article
  18. Review
  19. Article
  20. Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

B I M Wicky *Department of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-2501-7875
L F Milles *Department of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-8417-3205
A Courbet *Department of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0003-0539-7011
R J RagotteDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-6463-1595
J DauparasDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-0030-144X
E KinfuDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-2709-9157
S TippsDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9056-8959
R D KiblerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-6984-9887
M BaekDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0003-3414-9404
F DiMaioDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-7524-8938
X LiDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-5559-7578
L CarterDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-9837-9068
A KangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-5487-0499
H NguyenDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9696-4004
A K BeraDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9473-2912
D BakerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7896-6217
University of Washington · USHoward Hughes Medical Institute · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI MALCOLM S. CAPEL · 2018 to 2026
$34.2M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA015704NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

Deep learning generative approaches provide an opportunity to broadly explore protein structure space beyond the sequences and structures of natural proteins. Here, we use deep network hallucination to generate a wide range of symmetric protein homo-oligomers given only a specification of the number of protomers and the protomer length. Crystal structures of seven designs are very similar to the computational models (median root mean square deviation: 0.6 angstroms), as are three cryo-electron microscopy structures of giant 10-nanometer rings with up to 1550 residues and

Indexed as

Deep LearningProtein EngineeringBiocompatible MaterialsCryoelectron MicroscopyModels, MolecularProtein ConformationProtein SubunitsBiocompatible MaterialsProtein Subunits

Identifiers

PMID36108048
PMCPMC9724707
OpenAlexW4296031103

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.