Evidence map›Paper›PMID 36107856›Full record

ArticleDisease models & mechanisms2023

Acute frataxin knockdown in induced pluripotent stem cell-derived cardiomyocytes activates a type I interferon response.

M Grazia Cotticelli, Shujuan Xia, Rachel Truitt, Nicolai M Doliba, Andrea V Rozo, John W Tobias, Taehee Lee, Justin Chen, Jill S Napierala, Marek Napierala and 2 more

Open access · goldAbstract read
In one paragraph

Article in Disease models & mechanisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 14 citations in OpenAlex.

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  14. Mitochondrial DNA Release in Innate Immune Signaling.Annual review of biochemistry · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

M Grazia CotticelliDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Shujuan XiaDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Rachel TruittDepartment of Medicine, Division of Translational Medicine and Human Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Nicolai M DolibaInstitute of Diabetes, Obesity, and Metabolism, University of Pennsylvania, Philadelphia, PA 19104, USA.
Andrea V RozoInstitute of Diabetes, Obesity, and Metabolism, University of Pennsylvania, Philadelphia, PA 19104, USA.
John W TobiasDepartment of Genetics, Penn Genomics Analysis Core, University of Pennsylvania, Philadelphia, PA 19104, USA.
Taehee LeeDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Justin ChenDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.ORCID 0000-0002-7210-3063
Jill S NapieralaDepartment of Neurology, UT Southwestern Medical Center, Dallas, TX 75390, USA.
Marek NapieralaDepartment of Neurology, UT Southwestern Medical Center, Dallas, TX 75390, USA.
Wenli YangDepartment of Medicine, Division of Translational Medicine and Human Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Robert B WilsonDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.ORCID 0000-0001-6059-9762
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · USSouthwestern Medical Center · USTranslational Therapeutics (United States) · US

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1986 to 2026
$48.3M
p38 MAPK activation as a therapeutic target for Friedreich ataxiaR01NS124640 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI ROBERT B WILSON · 2022 to 2026
$2.9M
Children's Hospital of PhiladelphiaFriedreich's Ataxia Research AllianceHamilton and Finneran FamiliesNIDDK NIH HHS P30 DK019525NINDS NIH HHS R01 NS124640
6 · The paper itself

Abstract

Friedreich ataxia, the most common hereditary ataxia, is a neuro- and cardio-degenerative disorder caused, in most cases, by decreased expression of the mitochondrial protein frataxin. Cardiomyopathy is the leading cause of premature death. Frataxin functions in the biogenesis of iron-sulfur clusters, which are prosthetic groups that are found in proteins involved in many biological processes. To study the changes associated with decreased frataxin in human cardiomyocytes, we developed a novel isogenic model by acutely knocking down frataxin, post-differentiation, in cardiomyocytes derived from induced pluripotent stem cells (iPSCs). Transcriptome analysis of four biological replicates identified severe mitochondrial dysfunction and a type I interferon response as the pathways most affected by frataxin knockdown. We confirmed that, in iPSC-derived cardiomyocytes, loss of frataxin leads to mitochondrial dysfunction. The type I interferon response was activated in multiple cell types following acute frataxin knockdown and was caused, at least in part, by release of mitochondrial DNA into the cytosol, activating the cGAS-STING sensor pathway.

Indexed as

Friedreich AtaxiaInduced Pluripotent Stem CellsInterferon Type IDNA, MitochondrialFrataxinHumansIronIron-Binding ProteinsMitochondrial ProteinsMyocytes, CardiacNucleotidyltransferasesSulfurDNA, MitochondrialFrataxinInterferon Type IIronIron-Binding ProteinsMitochondrial ProteinsNucleotidyltransferasesSulfurCardiomyopathyFriedreich ataxiaInnate immunityInterferonmtDNA

Identifiers

PMID36107856
PMCPMC9637271
OpenAlexW4295897867

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.