Evidence map›Paper›PMID 36107835›Full record

ArticlePloS one2022

The Image Data Explorer: Interactive exploration of image-derived data.

Coralie Muller, Beatriz Serrano-Solano, Yi Sun, Christian Tischer, Jean-Karim Hériché

Abstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Coralie MullerCell Biology and Biophysics Unit, Heidelberg, Germany.ORCID 0000-0002-5186-1666
Beatriz Serrano-SolanoCell Biology and Biophysics Unit, Heidelberg, Germany.ORCID 0000-0002-5862-6132
Yi SunCell Biology and Biophysics Unit, Heidelberg, Germany.ORCID 0000-0002-7636-0200
Christian TischerCentre for Bioimage Analysis, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0003-4105-1990
Jean-Karim HérichéCell Biology and Biophysics Unit, Heidelberg, Germany.ORCID 0000-0001-6867-9425

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many bioimage analysis projects produce quantitative descriptors of regions of interest in images. Associating these descriptors with visual characteristics of the objects they describe is a key step in understanding the data at hand. However, as many bioimage data and their analysis workflows are moving to the cloud, addressing interactive data exploration in remote environments has become a pressing issue. To address it, we developed the Image Data Explorer (IDE) as a web application that integrates interactive linked visualization of images and derived data points with exploratory data analysis methods, annotation, classification and feature selection functionalities. The IDE is written in R using the shiny framework. It can be easily deployed on a remote server or on a local computer. The IDE is available at https://git.embl.de/heriche/image-data-explorer and a cloud deployment is accessible at https://shiny-portal.embl.de/shinyapps/app/01_image-data-explorer.

Indexed as

Software

Identifiers

PMID36107835
PMCPMC9477257

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.