Evidence map›Paper›PMID 36107766›Full record

ArticleNucleic acids research2022

Mechanism of protein-primed template-independent DNA synthesis by Abi polymerases.

Małgorzata Figiel, Marta Gapińska, Mariusz Czarnocki-Cieciura, Weronika Zajko, Małgorzata Sroka, Krzysztof Skowronek, Marcin Nowotny

Abstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Małgorzata FigielLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, Warsaw, Poland.
Marta GapińskaLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, Warsaw, Poland.
Mariusz Czarnocki-CieciuraLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, Warsaw, Poland.
Weronika ZajkoLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, Warsaw, Poland.
Małgorzata SrokaLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, Warsaw, Poland.
Krzysztof SkowronekBiophysics and Bioanalytics Facility, International Institute of Molecular and Cell Biology, Warsaw, Poland.ORCID 0000-0001-9973-7085
Marcin NowotnyLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, Warsaw, Poland.ORCID 0000-0001-8632-0977

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Abortive infection (Abi) is a bacterial antiphage defense strategy involving suicide of the infected cell. Some Abi pathways involve polymerases that are related to reverse transcriptases. They are unique in the way they combine the ability to synthesize DNA in a template-independent manner with protein priming. Here, we report crystal and cryo-electron microscopy structures of two Abi polymerases: AbiK and Abi-P2. Both proteins adopt a bilobal structure with an RT-like domain that comprises palm and fingers subdomains and a unique helical domain. AbiK and Abi-P2 adopt a hexameric and trimeric configuration, respectively, which is unprecedented for reverse transcriptases. Biochemical experiments showed that the formation of these oligomers is required for the DNA polymerization activity. The structure of the AbiK-DNA covalent adduct visualized interactions between the 3' end of DNA and the active site and covalent attachment of the 5' end of DNA to a tyrosine residue used for protein priming. Our data reveal a structural basis of the mechanism of highly unusual template-independent protein-priming polymerases.

Indexed as

DNARNA-Directed DNA PolymeraseAmino Acid SequenceCryoelectron MicroscopyDNA-Directed RNA PolymerasesHumansTyrosineDNADNA-Directed RNA PolymerasesRNA-Directed DNA PolymeraseTyrosine

Identifiers

PMID36107766
PMCPMC9508834

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.