Evidence map›Paper›PMID 36107637›Full record

ArticleImmunology2023

Transcriptomic profiling of cardiac tissues from SARS-CoV-2 patients identifies DNA damage.

Arutha Kulasinghe, Ning Liu, Chin Wee Tan, James Monkman, Jane E Sinclair, Dharmesh D Bhuva, David Godbolt, Liuliu Pan, Andy Nam, Habib Sadeghirad and 18 more

Open access · hybridAbstract read
In one paragraph

Article in Immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Pathway Analysis Interpretation in the Multi-Omic Era.Biotech (Basel (Switzerland)) · 2025
    Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Spatial multiomics of arterial regions from cardiac allograft vasculopathy rejected grafts reveal novel insights into the pathogenesis of chronic antibody-mediated rejection.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2024
    Article
  12. Lysosome-targeted ruthenium(II) complex encapsulated with pluronicJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 8 institutions in 5 countries.

Arutha KulasingheDiamantina Institute, Faculty of Medicine, The University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0003-3224-7350
Ning LiuThe Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID 0000-0002-9487-9305
Chin Wee TanThe Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID 0000-0001-9695-7218
James MonkmanDiamantina Institute, Faculty of Medicine, The University of Queensland, Brisbane, Queensland, Australia.
Jane E SinclairSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0002-9178-3869
Dharmesh D BhuvaThe Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID 0000-0002-6398-9157
David GodboltPathology Queensland, The Prince Charles Hospital, Chermside, Queensland, Australia.
Liuliu PanNanostring Technologies, Inc, Seattle, Washington, USA.
Andy NamNanostring Technologies, Inc, Seattle, Washington, USA.
Habib SadeghiradDiamantina Institute, Faculty of Medicine, The University of Queensland, Brisbane, Queensland, Australia.
Kei SatoCritical Care Research Group, Faculty of Medicine, University of Queensland and The Prince Charles Hospital, Brisbane, Queensland, Australia.
Gianluigi Li BassiCritical Care Research Group, Faculty of Medicine, University of Queensland and The Prince Charles Hospital, Brisbane, Queensland, Australia.
Ken O'ByrneThe Princess Alexandra Hospital, Woolloongabba, Queensland, Australia.
Camila HartmannPontifical Catholic University of Parana, Curitiba, Brazil.
Anna Flavia Ribeiro Dos Santos MiggiolaroPontifical Catholic University of Parana, Curitiba, Brazil.
Gustavo Lenci MarquesPontifical Catholic University of Parana, Curitiba, Brazil.
Lidia Zytynski MouraPontifical Catholic University of Parana, Curitiba, Brazil.
Derek RichardCentre for Genomics and Personalised Health, School of Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.
Mark AdamsCentre for Genomics and Personalised Health, School of Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.ORCID 0000-0003-1906-5018
Lucia de NoronhaPontifical Catholic University of Parana, Curitiba, Brazil.
Cristina Pellegrino BaenaPontifical Catholic University of Parana, Curitiba, Brazil.
Jacky Y SuenCritical Care Research Group, Faculty of Medicine, University of Queensland and The Prince Charles Hospital, Brisbane, Queensland, Australia.ORCID 0000-0002-0309-2524
Rakesh AroraDepartment of Surgery, University of Manitoba, Winnipeg, Manitoba, Canada.
Gabrielle T BelzDiamantina Institute, Faculty of Medicine, The University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0002-9660-9587
Kirsty R ShortDepartment of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne, Parkville, Victoria, Australia.ORCID 0000-0003-4963-6184
Melissa J DavisThe Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID 0000-0003-4864-7033
Fernando Souza-Fonseca GuimaraesDiamantina Institute, Faculty of Medicine, The University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0002-2037-8946
John F FraserPathology Queensland, The Prince Charles Hospital, Chermside, Queensland, Australia.ORCID 0000-0002-7012-2519
The University of Queensland · AUPontifícia Universidade Católica do Paraná · BRThe University of Melbourne · AUNanostring Technologies (United States) · USPrince Charles Hospital · AUQueensland University of Technology · AUPrincess Alexandra Hospital · AUUniversity of Manitoba · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is known to present with pulmonary and extra-pulmonary organ complications. In comparison with the 2009 pandemic (pH1N1), SARS-CoV-2 infection is likely to lead to more severe disease, with multi-organ effects, including cardiovascular disease. SARS-CoV-2 has been associated with acute and long-term cardiovascular disease, but the molecular changes that govern this remain unknown. In this study, we investigated the host transcriptome landscape of cardiac tissues collected at rapid autopsy from seven SARS-CoV-2, two pH1N1, and six control patients using targeted spatial transcriptomics approaches. Although SARS-CoV-2 was not detected in cardiac tissue, host transcriptomics showed upregulation of genes associated with DNA damage and repair, heat shock, and M1-like macrophage infiltration in the cardiac tissues of COVID-19 patients. The DNA damage present in the SARS-CoV-2 patient samples, were further confirmed by γ-H2Ax immunohistochemistry. In comparison, pH1N1 showed upregulation of interferon-stimulated genes, in particular interferon and complement pathways, when compared with COVID-19 patients. These data demonstrate the emergence of distinct transcriptomic profiles in cardiac tissues of SARS-CoV-2 and pH1N1 influenza infection supporting the need for a greater understanding of the effects on extra-pulmonary organs, including the cardiovascular system of COVID-19 patients, to delineate the immunopathobiology of SARS-CoV-2 infection, and long term impact on health.

Indexed as

Cardiovascular DiseasesCOVID-19HumansInterferonsSARS-CoV-2TranscriptomeInterferonscardiacCOVID-19SARS-CoV-2spatial profilingtranscriptomic

Identifiers

PMID36107637
PMCPMC9537957
OpenAlexW4295900980

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.