Evidence map›Paper›PMID 36107469›Full record

ArticleeLife2022

Rvb1/Rvb2 proteins couple transcription and translation during glucose starvation.

Yang S Chen, Wanfu Hou, Sharon Tracy, Alex T Harvey, Vince Harjono, Fan Xu, James J Moresco, John R Yates, Brian M Zid

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Differential roles of putative arginine fingers of AAAbioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yang S ChenDivision of Biological Sciences, University of California, San Diego, San Diego, United States.ORCID 0000-0003-3174-091X
Wanfu HouDepartment of Chemistry and Biochemistry, University of California San Diego, San Diego, United States.
Sharon TracyDepartment of Chemistry and Biochemistry, University of California San Diego, San Diego, United States.
Alex T HarveyDepartment of Chemistry and Biochemistry, University of California San Diego, San Diego, United States.
Vince HarjonoDepartment of Chemistry and Biochemistry, University of California San Diego, San Diego, United States.
Fan XuDivision of Biological Sciences, University of California, San Diego, San Diego, United States.ORCID 0000-0002-0041-4276
James J MorescoDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, United States.
John R YatesDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, United States.ORCID 0000-0001-5267-1672
Brian M ZidDepartment of Chemistry and Biochemistry, University of California San Diego, San Diego, United States.ORCID 0000-0003-1876-2479
University of California San Diego · USScripps Research Institute · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
Undergraduate Summer Research Supplement to R35R35GM128798 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZID, BRIAN MATTHEW · 2018 to 2023
$2.3M
NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R35 GM128798
6 · The paper itself

Abstract

During times of unpredictable stress, organisms must adapt their gene expression to maximize survival. Along with changes in transcription, one conserved means of gene regulation during conditions that quickly repress translation is the formation of cytoplasmic phase-separated mRNP granules such as P-bodies and stress granules. Previously, we identified that distinct steps in gene expression can be coupled during glucose starvation as promoter sequences in the nucleus are able to direct the subcellular localization and translatability of mRNAs in the cytosol. Here, we report that Rvb1 and Rvb2, conserved ATPase proteins implicated as protein assembly chaperones and chromatin remodelers, were enriched at the promoters and mRNAs of genes involved in alternative glucose metabolism pathways that we previously found to be transcriptionally upregulated but translationally downregulated during glucose starvation in yeast. Engineered Rvb1/Rvb2-binding on mRNAs was sufficient to sequester mRNAs into mRNP granules and repress their translation. Additionally, this Rvb tethering to the mRNA drove further transcriptional upregulation of the target genes. Further, we found that depletion of Rvb2 caused decreased alternative glucose metabolism gene mRNA induction, but upregulation of protein synthesis during glucose starvation. Overall, our results point to Rvb1/Rvb2 coupling transcription, mRNA granular localization, and translatability of mRNAs during glucose starvation. This Rvb-mediated rapid gene regulation could potentially serve as an efficient recovery plan for cells after stress removal.

Indexed as

GlucoseAdenosine TriphosphatasesChromatinDNA HelicasesRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsAdenosine TriphosphatasesChromatinDNA HelicasesGlucoseRNA, MessengerRVB1 protein, S cerevisiaeRVB2 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factorscell biologychromosomescotranscriptional loadinggene expressionS. cerevisiaestressstress granulestranslationyeast

Identifiers

PMID36107469
PMCPMC9531950
OpenAlexW4295763256

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.