Evidence map›Paper›PMID 36107026›Full record

ReviewProtein science : a publication of the Protein Society2022

Simple mechanisms for the evolution of protein complexity.

Arvind S Pillai, Georg K A Hochberg, Joseph W Thornton

Abstract readReview
In one paragraph

Review in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Selective control of ligand binding through a distal mutation that alters the protein native ensemble.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Symmetry facilitated the evolution of heterospecificity and high-order stoichiometry in vertebrate hemoglobin.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Protein Fold Usages in Ribosomes: Another Glance to the Past.International journal of molecular sciences · 2024
    Article
  15. Assessing the functional impact of protein binding site definition.Protein science : a publication of the Protein Society · 2024
    Article
  16. Article
  17. Review
  18. Metamorphic protein folding as evolutionary adaptation.Trends in biochemical sciences · 2023
    Review
  19. Article
  20. Simple mechanisms for the evolution of protein complexity.Protein science : a publication of the Protein Society · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Arvind S PillaiDepartment of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA.ORCID 0000-0002-5012-1199
Georg K A HochbergMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Joseph W ThorntonDepartment of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA.ORCID 0000-0001-9589-6994

Funding

Genetic and biophysical causes of historical protein evolutionR35GM145336 · NIGMS · UNIVERSITY OF CHICAGO · PI Joseph W Thornton · 2022 to 2026
$2.6M
Comprehensive analysis of fitness effects and epistasis along a billion-year evolutionary trajectoryR01GM139007 · NIGMS · UNIVERSITY OF CHICAGO · PI BOLON, DANIEL N, THORNTON, JOSEPH W · 2021 to 2024
$2.2M
Deep characterization of the sequence space and evolutionary trajectories of reconstructed ancestral proteins - Resubmission 01R01GM121931 · NIGMS · UNIVERSITY OF CHICAGO · PI THORNTON, JOSEPH W · 2017 to 2020
$1.3M
Evolution of molecular complexes: genetic, structural, and functional mechanisms for the evolution of oligomers and allosteryR01GM131128 · NIGMS · UNIVERSITY OF CHICAGO · PI THORNTON, JOSEPH W · 2019 to 2021
$904k
NIGMS NIH HHS R01 GM121931NIGMS NIH HHS R01 GM131128NIGMS NIH HHS R01GM131128NIGMS NIH HHS R01 GM139007NIGMS NIH HHS R01GM139007NIGMS NIH HHS R35 GM145336NIGMS NIH HHS R35-GM145336
6 · The paper itself

Abstract

Proteins are tiny models of biological complexity: specific interactions among their many amino acids cause proteins to fold into elaborate structures, assemble with other proteins into higher-order complexes, and change their functions and structures upon binding other molecules. These complex features are classically thought to evolve via long and gradual trajectories driven by persistent natural selection. But a growing body of evidence from biochemistry, protein engineering, and molecular evolution shows that naturally occurring proteins often exist at or near the genetic edge of multimerization, allostery, and even new folds, so just one or a few mutations can trigger acquisition of these properties. These sudden transitions can occur because many of the physical properties that underlie these features are present in simpler proteins as fortuitous by-products of their architecture. Moreover, complex features of proteins can be encoded by huge arrays of sequences, so they are accessible from many different starting points via many possible paths. Because the bridges to these features are both short and numerous, random chance can join selection as a key factor in explaining the evolution of molecular complexity.

Indexed as

Evolution, MolecularProteinsAmino AcidsMutationSelection, GeneticAmino AcidsProteins

Identifiers

PMID36107026
PMCPMC9601886

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.