Evidence map›Paper›PMID 36104389›Full record

ArticleScientific reports2022

Adsorption of ice-binding proteins onto whole ice crystal surfaces does not necessarily confer a high thermal hysteresis activity.

Tatsuya Arai, Akari Yamauchi, Yue Yang, Shiv Mohan Singh, Yuji C Sasaki, Sakae Tsuda

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Divergent Mechanisms of Ice Growth Inhibition by Antifreeze Proteins.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Tatsuya AraiDepartment of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 7H8 #609 Kiban Bldg., 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan. t.arai@edu.k.u-tokyo.ac.jp.
Akari YamauchiHibernation Metabolism, Physiology and Development Group, Institute of Low Temperature Science, Hokkaido University, Sapporo, 060-0819, Japan.
Yue YangDepartment of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 7H8 #609 Kiban Bldg., 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan.
Shiv Mohan SinghDepartment of Botany, Banaras Hindu University (BHU), Varanasi, 221005, India.
Yuji C SasakiDepartment of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 7H8 #609 Kiban Bldg., 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan.
Sakae TsudaDepartment of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 7H8 #609 Kiban Bldg., 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan.
The University of Tokyo · JPBanaras Hindu University · INHokkaido University · JPNational Institute of Advanced Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many psychrophilic microorganisms synthesize ice-binding proteins (IBPs) to survive the cold. The functions of IBPs are evaluated by the effect of the proteins on the nonequilibrium water freezing-point depression, which is called "thermal hysteresis (TH)", and the inhibitory effect of the proteins on the growth of larger ice crystals, which is called "ice recrystallization inhibition (IRI)". To obtain mechanical insight into the two activities, we developed a modified method of ice affinity purification and extracted two new IBP isoforms from Psychromyces glacialis, an Arctic glacier fungus. One isoform was found to be an approximately 25 kDa protein (PsgIBP_S), while the other is a 28 kDa larger protein (PsgIBP_L) that forms an intermolecular dimer. Their TH activities were less than 1 °C at millimolar concentrations, implying that both isoforms are moderately active but not hyperactive IBP species. It further appeared that both isoforms exhibit high IRI activity even at submicromolar concentrations. Furthermore, the isoforms can bind to the whole surface of a hemispherical single ice crystal, although such ice-binding was generally observed for hyperactive IBP species. These results suggest that the binding ability of IBPs to whole ice crystal surfaces is deficient for hyperactivity but is crucial for significant IRI activity.

Indexed as

Antifreeze ProteinsCarrier ProteinsAdsorptionCaspase 1Ice CoverAntifreeze ProteinsCarrier ProteinsCaspase 1

Identifiers

PMID36104389
PMCPMC9474881
OpenAlexW4295903972

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.