Evidence map›Paper›PMID 36104257›Full record

ArticleBMB reports2022

Conformational change of organic cofactor PLP is essential for catalysis in PLP-dependent enzymes.

Ho-Phuong-Thuy Ngo, Diem Quynh Nguyen, Hyunjae Park, Yoon Sik Park, Kiwoong Kwak, Taejoon Kim, Jang Ho Lee, Kyoung Sang Cho, Lin-Woo Kang

Open access · goldAbstract readNews
In one paragraph

Article in BMB reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Ho-Phuong-Thuy NgoDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Diem Quynh NguyenDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Hyunjae ParkDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Yoon Sik ParkDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Kiwoong KwakDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Taejoon KimDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Jang Ho LeeDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Kyoung Sang ChoDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Lin-Woo KangDepartment of Biological Sciences, Konkuk University, Seoul 05029, Korea.
Konkuk University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pyridoxal 5'-phosphate (PLP)-dependent enzymes are ubiquitous, catalyzing various biochemical reactions of approximately 4% of all classified enzymatic activities. They transform amines and amino acids into important metabolites or signaling molecules and are important drug targets in many diseases. In the crystal structures of PLP-dependent enzymes, organic cofactor PLP showed diverse conformations depending on the catalytic step. The conformational change of PLP is essential in the catalytic mechanism. In the study, we review the sophisticated catalytic mechanism of PLP, especially in transaldimination reactions. Most drugs targeting PLP-dependent enzymes make a covalent bond to PLP with the transaldimination reaction. A detailed understanding of organic cofactor PLP will help develop a new drug against PLP-dependent enzymes. [BMB Reports 2022; 55(9): 439-446].

Indexed as

Amino AcidsPyridoxal PhosphateAminesCatalysisPhosphatesAminesAmino AcidsPhosphatesPyridoxal Phosphate

Identifiers

PMID36104257
PMCPMC9537024
OpenAlexW4295899976

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.