Evidence map›Paper›PMID 36103708›Full record

ArticleGenetics2022

Complex genetics cause and constrain fungal persistence in different parts of the mammalian body.

Martin N Mullis, Caleb Ghione, Michael Lough-Stevens, Ilan Goldstein, Takeshi Matsui, Sasha F Levy, Matthew D Dean, Ian M Ehrenreich

Open access · hybridAbstract read
In one paragraph

Article in Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Martin N MullisMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0002-5134-7528
Caleb GhioneMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0003-4981-8498
Michael Lough-StevensMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0003-1041-8454
Ilan GoldsteinMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0003-2399-5031
Takeshi MatsuiJoint Initiative for Metrology in Biology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-5561-8751
Sasha F LevyJoint Initiative for Metrology in Biology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-0923-1636
Matthew D DeanMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0002-5601-4140
Ian M EhrenreichMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0001-5065-9063
University of Southern California · USSLAC National Accelerator Laboratory · US

Funding

Characterizing the complex underpinnings of genetic background effectsR35GM130381 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Ian Michael Ehrenreich · 2019 to 2026
$3.3M
Multiplexed In Vivo DNA AssemblyR01HG011676 · NHGRI · STANFORD UNIVERSITY · PI LEVY, SASHA F · 2022 to 2024
$2.9M
PPiSeq: High-Throughput Protein-Protein Interaction SequencingR01AI164530 · NIAID · STANFORD UNIVERSITY · PI SHERLOCK, GAVIN J · 2021 to 2024
$1.7M
Comprehensive dissection of higher-order genetic interactionsR01GM110255 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI EHRENREICH, IAN MICHAEL · 2014 to 2018
$1.4M
NHGRI NIH HHS R01 HG011676NIAID NIH HHS R01 AI164530NIGMS NIH HHS R01 GM110255NIGMS NIH HHS R35 GM130381
6 · The paper itself

Abstract

Determining how genetic polymorphisms enable certain fungi to persist in mammalian hosts can improve understanding of opportunistic fungal pathogenesis, a source of substantial human morbidity and mortality. We examined the genetic basis of fungal persistence in mice using a cross between a clinical isolate and the lab reference strain of the budding yeast Saccharomyces cerevisiae. Employing chromosomally encoded DNA barcodes, we tracked the relative abundances of 822 genotyped, haploid segregants in multiple organs over time and performed linkage mapping of their persistence in hosts. Detected loci showed a mix of general and antagonistically pleiotropic effects across organs. General loci showed similar effects across all organs, while antagonistically pleiotropic loci showed contrasting effects in the brain vs the kidneys, liver, and spleen. Persistence in an organ required both generally beneficial alleles and organ-appropriate pleiotropic alleles. This genetic architecture resulted in many segregants persisting in the brain or in nonbrain organs, but few segregants persisting in all organs. These results show complex combinations of genetic polymorphisms collectively cause and constrain fungal persistence in different parts of the mammalian body.

Indexed as

MycosesAllelesAnimalsBrainChromosome MappingHumansKidneyLiverMiceSaccharomyces cerevisiaeSpleenantagonistic pleiotropycomplex traitsfungal pathogenshost–pathogenmammal–fungus interactionsmicemouse–fungus interactionsyeast

Identifiers

PMID36103708
PMCPMC9630980
OpenAlexW4295788662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.