Evidence map›Paper›PMID 36103576›Full record

ArticleJournal of chemical theory and computation2022

Centroid Molecular Dynamics Can Be Greatly Accelerated through Neural Network Learned Centroid Forces Derived from Path Integral Molecular Dynamics.

Timothy D Loose, Patrick G Sahrmann, Gregory A Voth

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Article in Journal of chemical theory and computation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

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0cells of the map it votes in
4citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Timothy D LooseDepartment of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States.
Patrick G SahrmannDepartment of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States.ORCID 0000-0002-4781-9561
Gregory A VothDepartment of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States.ORCID 0000-0002-3267-6748

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For nearly the past 30 years, centroid molecular dynamics (CMD) has proven to be a viable classical-like phase space formulation for the calculation of quantum dynamical properties. However, calculation of the centroid effective force remains a significant computational cost and limits the ability of CMD to be an efficient approach to study condensed phase quantum dynamics. In this paper, we introduce a neural network-based methodology for first learning the centroid effective force from path integral molecular dynamics data, which is subsequently used as an effective force field to evolve the centroids directly with the CMD algorithm. This method, called machine-learned centroid molecular dynamics (ML-CMD), is faster and far less costly than both standard "on the fly" CMD and ring polymer molecular dynamics (RPMD). The training aspect of ML-CMD is also straightforwardly implemented utilizing the DeepMD software kit. ML-CMD is then applied to two model systems to illustrate the approach: liquid para-hydrogen and water. The results show comparable accuracy to both CMD and RPMD in the estimation of quantum dynamical properties, including the self-diffusion constant and velocity time correlation function, but with significantly reduced overall computational cost.

Indexed as

Molecular Dynamics SimulationQuantum TheoryHydrogenNeural Networks, ComputerPolymersWaterHydrogenPolymersWater

Identifiers

PMID36103576
PMCPMC9558744

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.