Evidence map›Paper›PMID 36102610›Full record

ArticleThe EMBO journal2022

E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation.

Keerthiraju E Ravichandran, Lars Kaduhr, Bozena Skupien-Rabian, Ekaterina Shvetsova, Mikołaj Sokołowski, Rościsław Krutyhołowa, Dominika Kwasna, Cindy Brachmann, Sean Lin, Sebastian Guzman Perez and 7 more

Abstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
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  10. Article
  11. Review
  12. Review
  13. The Ubiquitin-like Proteins ofBiomolecules · 2023
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Keerthiraju E RavichandranMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.ORCID 0000-0003-2568-1343
Lars KaduhrDepartment for Microbiology, Institute for Biology, University of Kassel, Kassel, Germany.
Bozena Skupien-RabianMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.
Ekaterina ShvetsovaDepartment of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland.ORCID 0000-0001-5612-7906
Mikołaj SokołowskiMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.
Rościsław KrutyhołowaMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.ORCID 0000-0002-8200-5627
Dominika KwasnaMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.
Cindy BrachmannDepartment for Microbiology, Institute for Biology, University of Kassel, Kassel, Germany.
Sean LinMax Planck Institute of Biochemistry, Martinsried, Germany.
Sebastian Guzman PerezMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.
Piotr WilkMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.ORCID 0000-0001-7217-4163
Manuel KöstersDepartment of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland.
Przemysław GrudnikMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.ORCID 0000-0002-7157-0014
Urszula JankowskaMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.ORCID 0000-0002-7165-8964
Sebastian A LeidelDepartment of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland.ORCID 0000-0002-0523-6325
Raffael SchaffrathDepartment for Microbiology, Institute for Biology, University of Kassel, Kassel, Germany.ORCID 0000-0001-9484-5247
Sebastian GlattMalopolska Centre of Biotechnology (MCB), Jagiellonian University, Krakow, Poland.ORCID 0000-0003-2815-7133

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Post-translational modifications by ubiquitin-like proteins (UBLs) are essential for nearly all cellular processes. Ubiquitin-related modifier 1 (Urm1) is a unique UBL, which plays a key role in tRNA anticodon thiolation as a sulfur carrier protein (SCP) and is linked to the noncanonical E1 enzyme Uba4 (ubiquitin-like protein activator 4). While Urm1 has also been observed to conjugate to target proteins like other UBLs, the molecular mechanism of its attachment remains unknown. Here, we reconstitute the covalent attachment of thiocarboxylated Urm1 to various cellular target proteins in vitro, revealing that, unlike other known UBLs, this process is E2/E3-independent and requires oxidative stress. Furthermore, we present the crystal structures of the peroxiredoxin Ahp1 before and after the covalent attachment of Urm1. Surprisingly, we show that urmylation is accompanied by the transfer of sulfur to cysteine residues in the target proteins, also known as cysteine persulfidation. Our results illustrate the role of the Uba4-Urm1 system as a key evolutionary link between prokaryotic SCPs and the UBL modifications observed in modern eukaryotes.

Indexed as

UbiquitinUbiquitinsAnticodonCarrier ProteinsCysteinePeroxiredoxinsSulfurAnticodonCarrier ProteinsCysteinePeroxiredoxinsSulfurUbiquitinUbiquitinsoxidative stresspersulfidationsulfur transferubiquitin-likeUrm1

Identifiers

PMID36102610
PMCPMC9574740

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.