ArticleIMA fungus2022
The first two mitochondrial genomes for the genus Ramaria reveal mitochondrial genome evolution of Ramaria and phylogeny of Basidiomycota.
Article in IMA fungus, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed, 22 citations in OpenAlex.
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- The first complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2026Article
- Mitochondrial genome characteristics and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2026Article
- Comparative analysis of mitochondrial genomes in lycoperdaceae fungi reveals intron dynamics and phylogenetic relationships.BMC genomics · 2025Article
- Phylogenetic Relationships of ThreeEcology and evolution · 2025Article
- Mitochondrial Genomes from Fungal the EntomopathogenicJournal of fungi (Basel, Switzerland) · 2025Article
- Characterization and phylogenetic analysis of the complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Comparative Mitogenomics Analysis Revealed Evolutionary Divergence amongMicroorganisms · 2024Article
- The complete mitochondrial genomes of five critical phytopathogenic Bipolaris species: features, evolution, and phylogeny.IMA fungus · 2024Article
- Intraspecific and interspecific variations in the synonymous codon usage in mitochondrial genomes of 8 pleurotus strains.BMC genomics · 2024Article
- Comparative Mitogenomics Analysis Revealed Evolutionary Divergence amongInternational journal of molecular sciences · 2024Article
- Characterization and phylogenetic analysis of theMitochondrial DNA. Part B, Resources · 2024Article
- Characterization of the complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2024Article
- Mitochondrial genomic characteristics and phylogenetic analysis of a brewing fungus,Mitochondrial DNA. Part B, Resources · 2024Article
- Characterization of the complete mitochondrial genome of the medical fungusMitochondrial DNA. Part B, Resources · 2024Article
- Characterization and phylogenetic analysis of the complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2024Article
- The first complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2024Article
- The first two mitochondrial genomes from Apiotrichum reveal mitochondrial evolution and different taxonomic assignment of Trichosporonales.IMA fungus · 2023Article
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9 authors at 3 institutions in 1 country.
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Abstract
In the present study, we assembled and analyzed the mitogenomes of two Ramaria species. The assembled mitogenomes of Ramaria cfr. rubripermanens and R. rubella were circularized, with sizes of 126,497 bp and 143,271 bp, respectively. Comparative mitogenome analysis showed that intron region contributed the most (contribution rate, 43.74%) to the size variations of Ramaria mitogenomes. The genetic contents, gene length, tRNAs, and codon usages of the two Ramaria mitogenomes varied greatly. In addition, the evolutionary rates of different core protein coding genes (PCGs) in Phallomycetidae mitogenomes varied. We detected large-scale gene rearrangements between Phallomycetidae mitogenomes, including gene displacement and tRNA doubling. A total of 4499 bp and 7746 bp aligned fragments were detected between the mitochondrial and nuclear genomes of R. cfr. rubripermanens and R. rubella, respectively, indicating possible gene transferring events. We further found frequent intron loss/gain and potential intron transfer events in Phallomycetidae mitogenomes during the evolution, and the mitogenomes of R. rubella contained a novel intron P44. Phylogenetic analyses using both Bayesian inference (BI) and Maximum Likelihood (ML) methods based on a combined mitochondrial gene dataset obtained an identical and well-supported phylogenetic tree for Basidiomycota, wherein R. cfr. rubripermanens and Turbinellus floccosus are sister species. This study served as the first report on mitogenomes from the genus Ramaria, which provides a basis for understanding the evolution, genetics, and taxonomy of this important fungal group.
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