Evidence map›Paper›PMID 36100301›Full record

ArticleBMJ open2022

Curating a knowledge base for individuals with coinfection of HIV and SARS-CoV-2: a study protocol of EHR-based data mining and clinical implementation.

Chen Liang, Sharon Weissman, Bankole Olatosi, Eric G Poon, Michael E Yarrington, Xiaoming Li

Open access · goldAbstract read
In one paragraph

Article in BMJ open, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Chen LiangDepartment of Health Services Policy and Management, University of South Carolina, Columbia, South Carolina, USA cliang@mailbox.sc.edu.ORCID 0000-0002-9803-9880
Sharon WeissmanBig Data Health Science Center, University of South Carolina, Columbia, South Carolina, USA.
Bankole OlatosiDepartment of Health Services Policy and Management, University of South Carolina, Columbia, South Carolina, USA.ORCID 0000-0002-8295-8735
Eric G PoonDepartment of Medicine, Duke University, Durham, North Carolina, USA.
Michael E YarringtonDepartment of Medicine, Duke University, Durham, North Carolina, USA.ORCID 0000-0003-3186-1519
Xiaoming LiBig Data Health Science Center, University of South Carolina, Columbia, South Carolina, USA.ORCID 0000-0002-5555-9034
University of South Carolina · USDuke University · US

Funding

Curating a Knowledge Base for Individuals with Coinfection of HIV and SARS-CoV-2: EHR-based Data MiningR21AI170171 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI LI, XIAOMING · 2022 to 2023
$409k
NIAID NIH HHS R21 AI170171
6 · The paper itself

Abstract

introductionDespite a higher risk of severe COVID-19 disease in individuals with HIV, the interactions between SARS-CoV-2 and HIV infections remain unclear. To delineate these interactions, multicentre Electronic Health Records (EHR) hold existing promise to provide full-spectrum and longitudinal clinical data, demographics and sociobehavioural data at individual level. Presently, a comprehensive EHR-based cohort for the HIV/SARS-CoV-2 coinfection has not been established; EHR integration and data mining methods tailored for studying the coinfection are urgently needed yet remain underdeveloped. METHODS AND ANALYSIS: The overarching goal of this exploratory/developmental study is to establish an EHR-based cohort for individuals with HIV/SARS-CoV-2 coinfection and perform large-scale EHR-based data mining to examine the interactions between HIV and SARS-CoV-2 infections and systematically identify and validate factors contributing to the severe clinical course of the coinfection. We will use a nationwide EHR database in the USA, namely, National COVID Cohort Collaborative (N3C). Ultimately, collected clinical evidence will be implemented and used to pilot test a clinical decision support prototype to assist providers in screening and referral of at-risk patients in real-world clinics. ETHICS AND DISSEMINATION: The study was approved by the institutional review boards at the University of South Carolina (Pro00121828) as non-human subject study. Study findings will be presented at academic conferences and published in peer-reviewed journals. This study will disseminate urgently needed clinical evidence for guiding clinical practice for individuals with the coinfection at Prisma Health, a healthcare system in collaboration.

Indexed as

CoinfectionCOVID-19HIV InfectionsData MiningElectronic Health RecordsHumansKnowledge BasesSARS-CoV-2COVID-19Health informaticsHIV & AIDS

Identifiers

PMID36100301
PMCPMC9471209
OpenAlexW4295752012

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.