Evidence map›Paper›PMID 36099931›Full record

ArticleOpen biology2022

Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties.

Franziska Ragaller, Luca Andronico, Jan Sykora, Waldemar Kulig, Tomasz Rog, Yagmur Balim Urem, Abhinav, Dmytro I Danylchuk, Martin Hof, Andrey Klymchenko and 3 more

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  4. Apical and basolateral plasma membranes in epithelial cells have distinct lipidomes and biophysical properties.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  9. Discovery of a novel inhibitor of macropinocytosis with antiviral activity.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
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  12. Review
  13. 2024: The quest continues.Open biology · 2024
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  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 4 countries.

Franziska RagallerScience for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, 17165 Solna, Sweden.ORCID 0000-0002-4148-262X
Luca AndronicoScience for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, 17165 Solna, Sweden.
Jan SykoraJ. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic.
Waldemar KuligDepartment of Physics, University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland.ORCID 0000-0001-7568-0029
Tomasz RogDepartment of Physics, University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland.
Yagmur Balim UremScience for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, 17165 Solna, Sweden.
AbhinavJ. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic.
Dmytro I DanylchukLaboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, 74 Route du Rhin, 67401 Illkirch, France.
Martin HofJ. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic.
Andrey KlymchenkoLaboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, 74 Route du Rhin, 67401 Illkirch, France.
Mariana AmaroJ. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic.
Ilpo VattulainenDepartment of Physics, University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland.ORCID 0000-0001-7408-3214
Erdinc SezginScience for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, 17165 Solna, Sweden.ORCID 0000-0002-4915-388X
Czech Academy of Sciences, J. Heyrovský Institute of Physical Chemistry · CZScience for Life Laboratory · SEUniversity of Helsinki · FICentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plasma membrane, as a highly complex cell organelle, serves as a crucial platform for a multitude of cellular processes. Its collective biophysical properties are largely determined by the structural diversity of the different lipid species it accommodates. Therefore, a detailed investigation of biophysical properties of the plasma membrane is of utmost importance for a comprehensive understanding of biological processes occurring therein. During the past two decades, several environment-sensitive probes have been developed and become popular tools to investigate membrane properties. Although these probes are assumed to report on membrane order in similar ways, their individual mechanisms remain to be elucidated. In this study, using model membrane systems, we characterized the probes Pro12A, NR12S and NR12A in depth and examined their sensitivity to parameters with potential biological implications, such as the degree of lipid saturation, double bond position and configuration (

Indexed as

Fluorescent DyesMolecular Dynamics SimulationCell MembraneCholesterolCholesterolFluorescent Dyesenvironment-sensitive probeslipid saturationMD simulationmodel membranesspectral imagingtime-resolved emission shift

Identifiers

PMID36099931
PMCPMC9470265
OpenAlexW4295751009

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.