Evidence map›Paper›PMID 36099278›Full record

ArticlePloS one2022

The genomic landscape of canine osteosarcoma cell lines reveals conserved structural complexity and pathway alterations.

Kate Megquier, Jason Turner-Maier, Kathleen Morrill, Xue Li, Jeremy Johnson, Elinor K Karlsson, Cheryl A London, Heather L Gardner

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Integrated Multiomic Profiling Enhances Risk Stratification and Prognostication in Canine Osteosarcoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kate MegquierBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-1458-0865
Jason Turner-MaierBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Kathleen MorrillBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Xue LiBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Jeremy JohnsonBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Elinor K KarlssonBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Cheryl A LondonCummings School of Veterinary Medicine at Tufts University, North Grafton, Massachusetts, United States of America.
Heather L GardnerCummings School of Veterinary Medicine at Tufts University, North Grafton, Massachusetts, United States of America.
Broad Institute · USTufts University · US

Funding

XENOGRAFT AND CELL LINE COREP01CA165995 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI GUTTRIDGE, DENIS C · 2013 to 2017
$7.9M
Transforming family dogs into a powerful and accessible model for human cancerR37CA218570 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI KARLSSON, ELINOR · 2018 to 2022
$3.2M
Leveraging canine spontaneous cancer to optimize the power of blood biopsyR01CA255319 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI KARLSSON, ELINOR, LONDON, CHERYL A · 2021 to 2025
$3.1M
Optimizing Novel Immunotherapy Combinations Targeting the Tumor Microenvironment in Canine Spontaneous OsteosarcomaU01CA224182 · NCI · COLORADO STATE UNIVERSITY · PI DOW, STEVEN W., LONDON, CHERYL A · 2017 to 2022
$2.8M
Elucidating the therapeutic utility of targeting metabolic dependencies in osteosarcomaK01OD028268 · OD · TUFTS UNIVERSITY BOSTON · PI GARDNER, HEATHER LYNN · 2020 to 2024
$631k
Advancing precision medicine through development of the canine comparative cancer modelF32CA247088 · NCI · BROAD INSTITUTE, INC. · PI MEGQUIER, KATHERINE JANE · 2020 to 2022
$205k
NCI NIH HHS F32 CA247088NCI NIH HHS P01 CA165995NCI NIH HHS R01 CA255319NCI NIH HHS R37 CA218570NCI NIH HHS U01 CA224182NIH HHS K01 OD028268
6 · The paper itself

Abstract

The characterization of immortalized canine osteosarcoma (OS) cell lines used for research has historically been based on phenotypic features such as cellular morphology and expression of bone specific markers. With the increasing use of these cell lines to investigate novel therapeutic approaches prior to in vivo translation, a much more detailed understanding regarding the genomic landscape of these lines is required to ensure accurate interpretation of findings. Here we report the first whole genome characterization of eight canine OS cell lines, including single nucleotide variants, copy number variants and other structural variants. Many alterations previously characterized in primary canine OS tissue were observed in these cell lines, including TP53 mutations, MYC copy number gains, loss of CDKN2A, PTEN, DLG2, MAGI2, and RB1 and structural variants involving SETD2, DLG2 and DMD. These data provide a new framework for understanding how best to incorporate in vitro findings generated using these cell lines into the design of future clinical studies involving dogs with spontaneous OS.

Indexed as

Bone NeoplasmsOsteosarcomaAnimalsCell LineDNA Copy Number VariationsDogsGenomics

Identifiers

PMID36099278
PMCPMC9469990
OpenAlexW4295459374

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.