Evidence map›Paper›PMID 36095215›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Nanobodies and chemical cross-links advance the structural and functional analysis of PI3Kα.

Jonathan R Hart, Xiao Liu, Chen Pan, Anyi Liang, Lynn Ueno, Yingna Xu, Alexandra Quezada, Xinyu Zou, Su Yang, Qingtong Zhou and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Oncogenic activation ofGenes & diseases · 2025
    Review
  4. Article
  5. Article
  6. Functional selection in SH3-mediated activation of the PI3 kinase.bioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. The essential roles of lncRNAs/PI3K/AKT axis in gastrointestinal tumors.Frontiers in cell and developmental biology · 2024
    Review
  9. Article
  10. Review
  11. Review
  12. Structural insights into the interaction of three Y-shaped ligands with PI3Kα.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Cryo-EM structures of cancer-specific helical and kinase domain mutations of PI3Kα.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 4 countries.

Jonathan R HartDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA 92037.ORCID 0000-0002-3905-225X
Xiao LiuThe CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai 201203, China.
Chen PaniHuman Institute, School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Anyi LiangSchool of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan 430074, China.
Lynn UenoDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA 92037.ORCID 0000-0001-8993-5168
Yingna XuDepartment of Pharmacology, School of Basic Medical Sciences, Fudan University, Shanghai 200032, China.
Alexandra QuezadaDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA 92037.
Xinyu ZouSchool of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan 430074, China.ORCID 0000-0002-9687-9317
Su YangDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA 92037.
Qingtong ZhouDepartment of Pharmacology, School of Basic Medical Sciences, Fudan University, Shanghai 200032, China.ORCID 0000-0001-8124-3079
Steve SchoonoogheVlaams Instituut voor Biotechnologie, Nanobody Core, Vrije Universiteit Brussel, 1050 Brussels, Belgium.
Gholamreza Hassanzadeh-GhassabehVlaams Instituut voor Biotechnologie, Nanobody Core, Vrije Universiteit Brussel, 1050 Brussels, Belgium.
Tian XiaSchool of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan 430074, China.
Wenqing ShuiiHuman Institute, School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Dehua YangThe CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai 201203, China.ORCID 0000-0003-3028-3243
Peter K VogtDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA 92037.ORCID 0000-0002-4519-7500
Ming-Wei WangDepartment of Pharmacology, School of Basic Medical Sciences, Fudan University, Shanghai 200032, China.ORCID 0000-0001-6550-9017
Scripps Research Institute · USFudan University · CNHuazhong University of Science and Technology · CNChinese Academy of Sciences · CNShanghaiTech University · CNVrije Universiteit Brussel · BE

Funding

Cancer genes: translating basics to applicationsR35CA197582 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI VOGT, PETER K · 2016 to 2022
$7.8M
Investigating Cancer-Specific Long Noncoding RNAs for Early Cancer DetectionR50CA243899 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI HART, JONATHAN ROSS · 2019 to 2021
$434k
NCI NIH HHS R35 CA197582NCI NIH HHS R50 CA243899
6 · The paper itself

Abstract

Nanobodies and chemical cross-linking were used to gain information on the identity and positions of flexible domains of PI3Kα. The application of chemical cross-linking mass spectrometry (CXMS) facilitated the identification of the p85 domains BH, cSH2, and SH3 as well as their docking positions on the PI3Kα catalytic core. Binding of individual nanobodies to PI3Kα induced activation or inhibition of enzyme activity and caused conformational changes that could be correlated with enzyme function. Binding of nanobody Nb3-126 to the BH domain of p85α substantially improved resolution for parts of the PI3Kα complex, and binding of nanobody Nb3-159 induced a conformation of PI3Kα that is distinct from known PI3Kα structures. The analysis of CXMS data also provided mechanistic insights into the molecular underpinning of the flexibility of PI3Kα.

Indexed as

Catalytic DomainClass Ia Phosphatidylinositol 3-KinaseClass I Phosphatidylinositol 3-KinasesHumansMass SpectrometrySingle-Domain AntibodiesClass Ia Phosphatidylinositol 3-KinaseClass I Phosphatidylinositol 3-KinasesPIK3CA protein, humanPIK3R1 protein, humanSingle-Domain Antibodieschemical cross-linkingconformational changesmass spectrometrynanobodyphosphoinositide 3-kinase (PI3K)

Identifiers

PMID36095215
PMCPMC9499577
OpenAlexW4295309377

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.