Evidence map›Paper›PMID 36095123›Full record

ArticleNucleic acids research2022

Trypanosoma brucei histones are heavily modified with combinatorial post-translational modifications and mark Pol II transcription start regions with hyperacetylated H2A.

Johannes P Maree, Andrey Tvardovskiy, Tina Ravnsborg, Ole N Jensen, Gloria Rudenko, Hugh-G Patterton

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

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  5. Frontiers in cellular and infection microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Johannes P MareeDepartment of Biochemistry, Stellenbosch University, Stellenbosch 7600, South Africa.ORCID 0000-0002-0964-1387
Andrey TvardovskiyDepartment of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, and Center for Epigenetics, University of Southern Denmark, Odense M DK-5230, Denmark.
Tina RavnsborgDepartment of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, and Center for Epigenetics, University of Southern Denmark, Odense M DK-5230, Denmark.
Ole N JensenDepartment of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, and Center for Epigenetics, University of Southern Denmark, Odense M DK-5230, Denmark.
Gloria RudenkoDepartment of Life Sciences, Imperial College London, London SW7 2AZ, UK.ORCID 0000-0003-1884-4933
Hugh-G PattertonCenter for Bioinformatics and Computational Biology, Stellenbosch University, Stellenbosch 7600, South Africa.
University of Southern Denmark · DKStellenbosch University · ZAImperial College London · GB

Funding

Reprogramming of the Trypanosoma brucei epigenome during human infection: opportuU01HG007465 · NHGRI · UNIVERSITY OF THE FREE STATE · PI PATTERTON, HUGH-GEORGE G · 2013 to 2016
$1.1M
NHGRI NIH HHS U01 HG007465Wellcome Trust 212211/Z/18/Z
6 · The paper itself

Abstract

Trypanosomes diverged from the main eukaryotic lineage about 600 million years ago, and display some unusual genomic and epigenetic properties that provide valuable insight into the early processes employed by eukaryotic ancestors to regulate chromatin-mediated functions. We analysed Trypanosoma brucei core histones by high mass accuracy middle-down mass spectrometry to map core histone post-translational modifications (PTMs) and elucidate cis-histone combinatorial PTMs (cPTMs). T. brucei histones are heavily modified and display intricate cPTMs patterns, with numerous hypermodified cPTMs that could contribute to the formation of non-repressive euchromatic states. The Trypanosoma brucei H2A C-terminal tail is hyperacetylated, containing up to five acetylated lysine residues. MNase-ChIP-seq revealed a striking enrichment of hyperacetylated H2A at Pol II transcription start regions, and showed that H2A histones that are hyperacetylated in different combinations localised to different genomic regions, suggesting distinct epigenetic functions. Our genomics and proteomics data provide insight into the complex epigenetic mechanisms used by this parasite to regulate a genome that lacks the transcriptional control mechanisms found in later-branched eukaryotes. The findings further demonstrate the complexity of epigenetic mechanisms that were probably shared with the last eukaryotic common ancestor.

Indexed as

Trypanosoma brucei bruceiChromatinHistone CodeHistonesLysineProtein Processing, Post-TranslationalProtozoan ProteinsChromatinHistonesLysineProtozoan Proteins

Identifiers

PMID36095123
PMCPMC9508842
OpenAlexW4295498034

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.