Evidence map›Paper›PMID 36095118›Full record

ArticleNucleic acids research2022

The KdmB-EcoA-RpdA-SntB chromatin complex binds regulatory genes and coordinates fungal development with mycotoxin synthesis.

Betim Karahoda, Lakhansing Pardeshi, Mevlut Ulas, Zhiqiang Dong, Niranjan Shirgaonkar, Shuhui Guo, Fang Wang, Kaeling Tan, Özlem Sarikaya-Bayram, Ingo Bauer and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Climate-Driven Regulatory Plasticity Reshapes Mycotoxin Risk and Control in Food Systems.Comprehensive reviews in food science and food safety · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Molecular regulation of fungal secondary metabolism.World journal of microbiology & biotechnology · 2023
    Review
  14. Review
  15. Genetic Regulation of Mycotoxin Biosynthesis.Journal of fungi (Basel, Switzerland) · 2022
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 4 countries.

Betim KarahodaBiology Department, Maynooth University, Maynooth, Co. Kildare, Ireland.
Lakhansing PardeshiFaculty of Health Sciences, University of Macau, Macau, China.ORCID 0000-0003-0702-5465
Mevlut UlasBiology Department, Maynooth University, Maynooth, Co. Kildare, Ireland.ORCID 0000-0001-9284-8727
Zhiqiang DongFaculty of Health Sciences, University of Macau, Macau, China.ORCID 0000-0002-3435-0522
Niranjan ShirgaonkarFaculty of Health Sciences, University of Macau, Macau, China.ORCID 0000-0001-6078-1409
Shuhui GuoFaculty of Health Sciences, University of Macau, Macau, China.ORCID 0000-0002-3217-5871
Fang WangFaculty of Health Sciences, University of Macau, Macau, China.ORCID 0000-0002-2078-9833
Kaeling TanFaculty of Health Sciences, University of Macau, Macau, China.ORCID 0000-0002-3347-7628
Özlem Sarikaya-BayramBiology Department, Maynooth University, Maynooth, Co. Kildare, Ireland.ORCID 0000-0003-0909-9556
Ingo BauerInstitute of Molecular Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-3316-7769
Paul DowlingBiology Department, Maynooth University, Maynooth, Co. Kildare, Ireland.
Alastair B FlemingDepartment of Microbiology, School of Genetics and Microbiology, Moyne Institute of Preventive Medicine, Trinity College Dublin, Dublin, Ireland.
Brandon T PfannenstielDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, USA.
Dianiris Luciano-RosarioDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, USA.
Harald BergerDepartment of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Tulln, Austria.
Stefan GraessleInstitute of Molecular Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria.ORCID 0000-0003-0443-5709
Mohamed M AlhussainDepartment of Microbiology, School of Genetics and Microbiology, Moyne Institute of Preventive Medicine, Trinity College Dublin, Dublin, Ireland.
Joseph StraussDepartment of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Tulln, Austria.
Nancy P KellerDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, USA.
Koon Ho WongFaculty of Health Sciences, University of Macau, Macau, China.ORCID 0000-0002-9264-5118
Özgür BayramBiology Department, Maynooth University, Maynooth, Co. Kildare, Ireland.ORCID 0000-0002-0283-5322
University of Macau · MONational University of Ireland, Maynooth · IEUniversity of Wisconsin–Madison · USBOKU University · ATInnsbruck Medical University · ATTrinity College Dublin · IE

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
Comprehensive analysis of NRPS-derived metabolomes of three Aspergillus speciesR01GM112739 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KELLER, NANCY P · 2015 to 2023
$2.8M
Austrian Science Fund FWF P 24803Austrian Science Fund FWF P 32790NIGMS NIH HHS R01 GM112739NIGMS NIH HHS T32 GM007133
6 · The paper itself

Abstract

Chromatin complexes control a vast number of epigenetic developmental processes. Filamentous fungi present an important clade of microbes with poor understanding of underlying epigenetic mechanisms. Here, we describe a chromatin binding complex in the fungus Aspergillus nidulans composing of a H3K4 histone demethylase KdmB, a cohesin acetyltransferase (EcoA), a histone deacetylase (RpdA) and a histone reader/E3 ligase protein (SntB). In vitro and in vivo evidence demonstrate that this KERS complex is assembled from the EcoA-KdmB and SntB-RpdA heterodimers. KdmB and SntB play opposing roles in regulating the cellular levels and stability of EcoA, as KdmB prevents SntB-mediated degradation of EcoA. The KERS complex is recruited to transcription initiation start sites at active core promoters exerting promoter-specific transcriptional effects. Interestingly, deletion of any one of the KERS subunits results in a common negative effect on morphogenesis and production of secondary metabolites, molecules important for niche securement in filamentous fungi. Consequently, the entire mycotoxin sterigmatocystin gene cluster is downregulated and asexual development is reduced in the four KERS mutants. The elucidation of the recruitment of epigenetic regulators to chromatin via the KERS complex provides the first mechanistic, chromatin-based understanding of how development is connected with small molecule synthesis in fungi.

Indexed as

Aspergillus nidulansChromatinAcetyltransferasesFungal ProteinsGene Expression Regulation, FungalGenes, FungalGenes, RegulatorHistone DeacetylasesHistone DemethylasesHistonesSterigmatocystinUbiquitin-Protein LigasesAcetyltransferasesChromatinFungal ProteinsHistone DeacetylasesHistone DemethylasesHistonesSterigmatocystinUbiquitin-Protein Ligases

Identifiers

PMID36095118
PMCPMC9508808
OpenAlexW4295422825

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.