Evidence map›Paper›PMID 36094622›Full record

ArticlePlanta2022

Disruption of tomato TGS machinery by ToLCNDV causes reprogramming of vascular tissue-specific TORNADO1 gene expression.

Shreya Chowdhury, Ananya Mukherjee, Shrabani Basak, Rohit Das, Arunava Mandal, Pallob Kundu

Abstract read
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In one paragraph

Article in Planta, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shreya ChowdhuryDivision of Plant Biology, Bose Institute, EN Block, Sector V, Bidhan Nagar, Kolkata, 700091, West Bengal, India.
Ananya MukherjeeDivision of Plant Biology, Bose Institute, EN Block, Sector V, Bidhan Nagar, Kolkata, 700091, West Bengal, India.
Shrabani BasakDivision of Plant Biology, Bose Institute, EN Block, Sector V, Bidhan Nagar, Kolkata, 700091, West Bengal, India.
Rohit DasDivision of Plant Biology, Bose Institute, EN Block, Sector V, Bidhan Nagar, Kolkata, 700091, West Bengal, India.
Arunava MandalDivision of Plant Biology, Bose Institute, EN Block, Sector V, Bidhan Nagar, Kolkata, 700091, West Bengal, India.
Pallob KunduDivision of Plant Biology, Bose Institute, EN Block, Sector V, Bidhan Nagar, Kolkata, 700091, West Bengal, India. pkundu@jcbose.ac.in.ORCID http://orcid.org/0000-0003-4272-945X
Bose Institute · INUniversity of Calcutta · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionVascular development-related TRN1 transcription is suppressed by cytosine methylation in fully developed leaves of tomato. ToLCNDV infection disrupts methylation machinery and reactivates TRN1 expression - likely causing abnormal leaf growth pattern. Leaf curl disease of tomato caused by tomato leaf curl New Delhi virus (ToLCNDV) inflicts huge economical loss. Disease symptoms resemble leaf developmental defects including abnormal vein architecture. Leaf vein patterning-related TORNADO1 gene's (SlTRN1) transcript level is augmented in virus-infected leaves. To elucidate the molecular mechanism of the upregulation of SlTRN1 in vivo, we have deployed SlTRN1 promoter-reporter transgenic tomato plants and investigated the gene's dynamic expression pattern in leaf growth stages and infection. Expression of the gene was delimited in the vascular tissues and suppressed in fully developed leaves. WRKY16 transcription factor readily activated SlTRN1 promoter in varied sized leaves and upon virus infection, while silencing of WRKY16 gene resulted in dampened promoter activity. Methylation-sensitive PCR analyses confirmed the accumulation of CHH methylation at multiple locations in the SlTRN1 promoter in older leaves. However, ToLCNDV infection reverses the methylation status and restores expression level in the leaf vascular bundle. The virus dampens the level of key maintenance and de novo DNA methyltransferases SlDRM5, SlMET1, SlCMT2 with concomitant augmentation of two DNA demethylases, SlDML1 and SlDML2 levels in SlTRN1 promoter-reporter transgenics. Transient overexpression of SlDML2 mimics the virus-induced hypomethylation state of the SlTRN1 promoter in mature leaves, while silencing of SlDML2 lessens promoter activity. Furthermore, in line with the previous studies, we confirm the crucial role of viral suppressors of RNA silencing AC2 and AC4 proteins in promoting DNA demethylation and directing it to restore activated transcription of SlTRN1. Unusually elevated expression of SlTRN1 may negatively impact normal growth of leaves.

Indexed as

BegomovirusSolanum lycopersicumGene ExpressionPlant DiseasesPlants, Genetically ModifiedBegomovirus ORFs AC1, AC2, AC4Disease symptomDNA demethylaseDNA methylationDNA methyltransferaseGene silencingLeaf curlLeaf veinReporter assayToLCNDVTranscriptionTransgenicWRKY16

Identifiers

PMID36094622
OpenAlexW4295270891

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.