Evidence map›Paper›PMID 36094198›Full record

ArticleMicrobiology spectrum2022

Immunoinformatics Approach to Design Novel Subunit Vaccine against the Epstein-Barr Virus.

Abu Tayab Moin, Rajesh B Patil, Tahani Tabassum, Yusha Araf, Md Asad Ullah, Hafsa Jarin Snigdha, Tawfiq Alam, Safwan Araf Alvey, Bashudev Rudra, Sohana Akter Mina and 3 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 56 citations in OpenAlex.

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  12. Computational vaccine development against protozoa.Computational and structural biotechnology journal · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 4 countries.

Abu Tayab MoinThe State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.ORCID 0000-0002-2954-3215
Rajesh B Patil *Department of Pharmaceutical Chemistry, Sinhgad Technical Education Society's, Sinhgad College of Pharmacy, Vadgaon (Bk), Maharashtra, India.
Tahani Tabassum *Biotechnology Program, Department of Mathematics and Natural Sciences, School of Data and Sciences, BRAC University, Dhaka, Bangladesh.
Yusha Araf *The State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.ORCID 0000-0002-0144-5875
Md Asad Ullah *Department of Biotechnology and Genetic Engineering, Faculty of Biological Sciences, Jahangirnagar University, Savar, Dhaka, Bangladesh.
Hafsa Jarin SnigdhaDepartment of Microbiology, School of Environmental and Life Sciences, Independent University Bangladesh.
Tawfiq AlamDepartment of Genetic Engineering and Biotechnology, School of Life Sciences, Shahjalal University of Science and Technology, Sylhet, Bangladesh.
Safwan Araf AlveyDepartment of Physics, University of Dhaka, Dhaka, Bangladesh.
Bashudev RudraDepartment of Genetic Engineering and Biotechnology, Faculty of Biological Sciences, University of Chittagong, Chattogram, Bangladesh.
Sohana Akter MinaDepartment of Genetic Engineering and Biotechnology, Faculty of Biological Sciences, University of Chittagong, Chattogram, Bangladesh.
Yasmin AkterDepartment of Genetic Engineering and Biotechnology, Faculty of Biological Sciences, University of Chittagong, Chattogram, Bangladesh.
Jingbo ZhaiMedical College, Inner Mongolia Minzu University, Tongliao, China.
Chunfu ZhengThe State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.ORCID 0000-0002-8797-1322
University of Chittagong · BDBangladesh Agricultural University · BDBRAC University · BDIndependent University · BDInner Mongolia University · CNJahangirnagar University · BDShahjalal University of Science and Technology · BDSinhgad Dental College and Hospital · INUniversity of Calgary · CAUniversity of Dhaka · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epstein-Barr virus (EBV) is a lymphotropic virus responsible for numerous epithelial and lymphoid cell malignancies, including gastric carcinoma, Hodgkin's lymphoma, nasopharyngeal carcinoma, and Burkitt lymphoma. Hundreds of thousands of people worldwide get infected with this virus, and in most cases, this viral infection leads to cancer. Although researchers are trying to develop potential vaccines and drug therapeutics, there is still no effective vaccine to combat this virus. In this study, the immunoinformatics approach was utilized to develop a potential multiepitope subunit vaccine against the two most common subtypes of EBV, targeting three of their virulent envelope glycoproteins. Eleven cytotoxic T lymphocyte (CTL) epitopes, 11 helper T lymphocyte (HTL) epitopes, and 10 B-cell lymphocyte (BCL) epitopes were predicted to be antigenic, nonallergenic, nontoxic, and fully conserved among the two subtypes, and nonhuman homologs were used for constructing the vaccine after much analysis. Later, further validation experiments, including molecular docking with different immune receptors (e.g., Toll-like receptors [TLRs]), molecular dynamics simulation analyses (including root means square deviation [RMSD], root mean square fluctuation [RMSF], radius of gyration [Rg], principal-component analysis [PCA], dynamic cross-correlation [DCC], definition of the secondary structure of proteins [DSSP], and Molecular Mechanics Poisson-Boltzmann Surface Area [MM-PBSA]), and immune simulation analyses generated promising results, ensuring the safe and stable response of the vaccine with specific immune receptors after potential administration within the human body. The vaccine's high binding affinity with TLRs was revealed in the docking study, and a very stable interaction throughout the simulation proved the potential high efficacy of the proposed vaccine. Further,

Indexed as

Epstein-Barr Virus InfectionsViral VaccinesComputational BiologyEpitopes, B-LymphocyteEpitopes, T-LymphocyteHerpesvirus 4, HumanHumansMolecular Docking SimulationVaccines, CombinedVaccines, SubunitEpitopes, B-LymphocyteEpitopes, T-LymphocyteVaccines, CombinedVaccines, SubunitViral Vaccinesenvelope glycoproteinsEpstein-Barr virusimmunoinformaticsmolecular dynamics simulationsubunit vaccine

Identifiers

PMID36094198
PMCPMC9603631
OpenAlexW4295886858

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.