Evidence map›Paper›PMID 36090499›Full record

ArticleKidney international reports2022

Framework From a Multidisciplinary Approach for Transitioning Variants of Unknown Significance From Clinical Genetic Testing in Kidney Disease to a Definitive Classification.

Uyenlinh L Mirshahi, Ahana Bhan, Lotte E Tholen, Brian Fang, Guoli Chen, Bryn Moore, Adam Cook, Prince Mohan Anand, Kashyap Patel, Mary E Haas and 7 more

Open access · goldAbstract read
In one paragraph

Article in Kidney international reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Digenic HNF1A and ABCC8 variants provide mechanistic insight into early-onset diabetes.The Journal of clinical endocrinology and metabolism · 2026
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 3 countries.

Uyenlinh L MirshahiDepartment of Molecular and Functional Genomics, Geisinger, Pennsylvania, USA.
Ahana BhanKidney Health Research Institute, Geisinger, Danville, Pennsylvania, USA.
Lotte E TholenDepartment of Physiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands.
Brian FangGeisinger Commonwealth School of Medicine, Scranton, Pennsylvania, USA.
Guoli ChenDepartment of Pathology, Penn State Health Hershey Medical Center, Hershey, Pennsylvania, USA.
Bryn MooreDepartment of Molecular and Functional Genomics, Geisinger, Pennsylvania, USA.
Adam CookDepartment of Molecular and Functional Genomics, Geisinger, Pennsylvania, USA.
Prince Mohan AnandDepartment of Nephrology, Medical University of South Carolina, Lancaster, South Carolina, USA.
Kashyap PatelInstitute of Biomedical and Clinical Science, College of Medicine and Health, University of Exeter, Exeter, UK.
Mary E HaasRegeneron Genetics Center, Sawmill Road, Tarrytown, New York, USA.
Luca A LottaRegeneron Genetics Center, Sawmill Road, Tarrytown, New York, USA.
Peter IgarashiDepartment of Medicine, University of Minnesota, Minneapolis, Minnesota, USA.
Jeroen H F de BaaijDepartment of Physiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands.
Silvia FerrèNational Kidney Foundation, New York, New York, USA.
Joost G J HoenderopDepartment of Physiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands.
David J CareyDepartment of Molecular and Functional Genomics, Geisinger, Pennsylvania, USA.
Alexander R ChangKidney Health Research Institute, Geisinger, Danville, Pennsylvania, USA.
Radboud University Nijmegen · NLGeisinger Neuroscience Institute · USRegeneron (United States) · USGeisinger Commonwealth School of Medicine · USMedical University of South Carolina · USNational Kidney Foundation · USPenn State Milton S. Hershey Medical Center · USUniversity of Exeter · GBUniversity of Minnesota · US

Funding

REGULATION OF RENAL NA+/H+ EXCHANGER GENE EXPRESSIONR01DK042921 · NIDDK · YALE UNIVERSITY · PI IGARASHI, PETER · 1991 to 2025
$5.1M
NIDDK NIH HHS R01 DK042921
6 · The paper itself

Abstract

Introduction: Monogenic causes in over 300 kidney-associated genes account for approximately 12% of end stage kidney disease (ESKD) cases. Advances in sequencing and large customized panels enable the noninvasive diagnosis of monogenic kidney disease at relatively low cost, thereby allowing for more precise management for patients and their families. A major challenge is interpreting rare variants, many of which are classified as variants of unknown significance (VUS). We present a framework in which we thoroughly evaluated and provided evidence of pathogenicity for Methods: A blueprint was designed by a multidisciplinary team of clinicians, molecular biologists, and diagnostic geneticists. The blueprint included using a health system-based cohort with genetic and clinical information to perform deep phenotyping of VUS heterozygotes to identify the candidate VUS and rule out other VUS, examination of existing genetic databases, as well as functional testing. Results: Our approach demonstrated evidence for pathogenicity for Conclusion: Determination of a molecular diagnosis for the example family allows for proper surveillance and management of

Indexed as

autosomal dominant tubulointerstitial kidney disease (ADTKD)chronic kidney diseasegeneticsHNF1B-MODYhypomagnesemiapancreatitis

Identifiers

PMID36090499
PMCPMC9459028
OpenAlexW4284897922

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.