Evidence map›Paper›PMID 36087209›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Grouping T-Cell Antigen Receptors by Specificity.

Chunlin Wang, Huang Huang, Mark M Davis

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Neoantigens: promising targets for cancer therapy.Signal transduction and targeted therapy · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chunlin WangInstitute of Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA. chunlin@me.com.
Huang HuangInstitute of Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.
Mark M DavisInstitute of Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
The effects of immune-age on immune-response and the molecular mechanisms which drive itP01AI153559 · NIAID · STANFORD UNIVERSITY · PI SHEN-ORR, SHAI SHLOMO · 2021 to 2025
$17.8M
NIAID NIH HHS P01 AI153559NIAID NIH HHS U19 AI057229
6 · The paper itself

Abstract

Grouping TCRs on the similarity of CDR3 sequences could effectively cluster them by specificity. Three versions of the GLIPH algorithm are described briefly here, with instructions to use GLIPH algorithms to cluster TCRs by specificity.

Indexed as

AlgorithmsReceptors, Antigen, T-CellReceptors, Antigen, T-CellCDR3ClusteringGLIPHSpecificityTCR

Identifiers

PMID36087209
PMCPMC10035763

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.