Evidence map›Paper›PMID 36085309›Full record

ArticleCommunications biology2022

Genetic and microenvironmental intra-tumor heterogeneity impacts colorectal cancer evolution and metastatic development.

Daniel Sobral, Marta Martins, Shannon Kaplan, Mahdi Golkaram, Michael Salmans, Nafeesa Khan, Raakhee Vijayaraghavan, Sandra Casimiro, Afonso Fernandes, Paula Borralho and 21 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 5 institutions in 2 countries.

Daniel Sobral *Associate Laboratory i4HB - Institute for Health and Bioeconomy, NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal.ORCID http://orcid.org/0000-0003-3955-0117
Marta Martins *Instituto de Medicina Molecular- João Lobo Antunes, Faculdade de Medicina de Lisboa, Avenida Professor Egas Moniz, 1649-028, Lisboa, Portugal.ORCID http://orcid.org/0000-0003-0429-9380
Shannon KaplanIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.ORCID http://orcid.org/0000-0003-3497-3196
Mahdi GolkaramIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Michael SalmansIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Nafeesa KhanIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Raakhee VijayaraghavanIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Sandra CasimiroInstituto de Medicina Molecular- João Lobo Antunes, Faculdade de Medicina de Lisboa, Avenida Professor Egas Moniz, 1649-028, Lisboa, Portugal.ORCID http://orcid.org/0000-0002-6917-4477
Afonso FernandesInstituto de Medicina Molecular- João Lobo Antunes, Faculdade de Medicina de Lisboa, Avenida Professor Egas Moniz, 1649-028, Lisboa, Portugal.
Paula BorralhoInstituto de Medicina Molecular- João Lobo Antunes, Faculdade de Medicina de Lisboa, Avenida Professor Egas Moniz, 1649-028, Lisboa, Portugal.
Cristina FerreiraCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Rui PintoAssociate Laboratory i4HB - Institute for Health and Bioeconomy, NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal.ORCID http://orcid.org/0000-0003-4743-0457
Catarina AbreuCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Ana Lúcia CostaCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Shile ZhangIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Traci PawlowskiIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Jim GodseyIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
André MansinhoInstituto de Medicina Molecular- João Lobo Antunes, Faculdade de Medicina de Lisboa, Avenida Professor Egas Moniz, 1649-028, Lisboa, Portugal.ORCID http://orcid.org/0000-0001-8771-0838
Daniela MacedoCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Soraia Lobo-MartinsCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Pedro FilipeCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Rui EstevesCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
João CoutinhoCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Paulo Matos CostaCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.ORCID http://orcid.org/0000-0002-7550-8285
Afonso RamiresCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Fernando AldeiaCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
António QuintelaCentro Hospitalar Universitário Lisboa Norte, Hospital de Santa Maria, Lisboa, Portugal.
Alex SoIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Li LiuIllumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA. lliu3@illumina.com.ORCID http://orcid.org/0000-0001-8580-3432
Ana Rita GrossoAssociate Laboratory i4HB - Institute for Health and Bioeconomy, NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal. argrosso@fct.unl.pt.ORCID http://orcid.org/0000-0001-6974-4209
Luis CostaInstituto de Medicina Molecular- João Lobo Antunes, Faculdade de Medicina de Lisboa, Avenida Professor Egas Moniz, 1649-028, Lisboa, Portugal. lmcosta@medicina.ulisboa.pt.ORCID http://orcid.org/0000-0002-4782-7318
Centro Hospitalar Lisboa Norte · PTIllumina (United States) · USInstituto de Medicina Molecular João Lobo AntunesUniversidade Nova de Lisboa · PTHospital de Egas Moniz · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Colorectal cancer (CRC) is a highly diverse disease, where different genomic instability pathways shape genetic clonal diversity and tumor microenvironment. Although intra-tumor heterogeneity has been characterized in primary tumors, its origin and consequences in CRC outcome is not fully understood. Therefore, we assessed intra- and inter-tumor heterogeneity of a prospective cohort of 136 CRC samples. We demonstrate that CRC diversity is forged by asynchronous forms of molecular alterations, where mutational and chromosomal instability collectively boost CRC genetic and microenvironment intra-tumor heterogeneity. We were able to depict predictor signatures of cancer-related genes that can foresee heterogeneity levels across the different tumor consensus molecular subtypes (CMS) and primary tumor location. Finally, we show that high genetic and microenvironment heterogeneity are associated with lower metastatic potential, whereas late-emerging copy number variations favor metastasis development and polyclonal seeding. This study provides an exhaustive portrait of the interplay between genetic and microenvironment intra-tumor heterogeneity across CMS subtypes, depicting molecular events with predictive value of CRC progression and metastasis development.

Indexed as

Colorectal NeoplasmsDNA Copy Number VariationsHumansOncogenesProspective StudiesTumor Microenvironment

Identifiers

PMID36085309
PMCPMC9463147
OpenAlexW4295506433

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.