Evidence map›Paper›PMID 36083388›Full record

ArticleGenetica2022

Species and population genomic differentiation in Pocillopora corals (Cnidaria, Hexacorallia).

Didier Aurelle, Marine Pratlong, Nicolas Oury, Anne Haguenauer, Pauline Gélin, Hélène Magalon, Mehdi Adjeroud, Pascal Romans, Jeremie Vidal-Dupiol, Michel Claereboudt and 6 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Genetica, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 4 countries.

Didier AurelleAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France. didier.aurelle@univ-amu.fr.ORCID http://orcid.org/0000-0002-3922-7291
Marine PratlongAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France.ORCID http://orcid.org/0000-0002-3406-9829
Nicolas OuryUMR ENTROPIE (Université de La Réunion, IRD, IFREMER, Université de Nouvelle-Calédonie, CNRS), Université de La Réunion, Saint-Denis La Réunion, France.ORCID http://orcid.org/0000-0002-5386-4633
Anne HaguenauerAix Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Marseille, France.ORCID http://orcid.org/0000-0003-2332-2929
Pauline GélinUMR ENTROPIE (Université de La Réunion, IRD, IFREMER, Université de Nouvelle-Calédonie, CNRS), Université de La Réunion, Saint-Denis La Réunion, France.
Hélène MagalonUMR ENTROPIE (Université de La Réunion, IRD, IFREMER, Université de Nouvelle-Calédonie, CNRS), Université de La Réunion, Saint-Denis La Réunion, France.ORCID http://orcid.org/0000-0002-7061-955X
Mehdi AdjeroudUMR ENTROPIE (Université de La Réunion, IRD, IFREMER, Université de Nouvelle-Calédonie, CNRS), Université de La Réunion, Saint-Denis La Réunion, France.ORCID http://orcid.org/0000-0002-6825-8759
Pascal RomansCentre de Ressources Biologiques Marines, Sorbonne Universités, UPMC Univ Paris 06, Observatoire Océanologique, UMS 2348, Banyuls/Mer, France.
Jeremie Vidal-DupiolIHPE, Univ. Montpellier, CNRS, Ifremer, Univ. Perpignan Via Domitia, Montpellier France, Montpellier, France.ORCID http://orcid.org/0000-0002-0577-2953
Michel ClaereboudtDepartment of Marine Science and Fisheries, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khod, 123, Muscat, Sultanate of Oman.ORCID http://orcid.org/0000-0003-0868-338X
Camille NoûsLaboratoire Cogitamus, Paris, France.
Lauric ReynesAix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France.ORCID http://orcid.org/0000-0002-0223-4332
Eve ToulzaIHPE, Univ. Montpellier, CNRS, Ifremer, Univ. Perpignan Via Domitia, Montpellier France, Montpellier, France.ORCID http://orcid.org/0000-0003-2049-2279
François BonhommeISEM, Univ Montpellier, CNRS, IRD, EPHE, 34000, Montpellier, France.ORCID http://orcid.org/0000-0002-8792-9239
Guillaume MittaEIO, Univ Polynesie Francaise, ILM, IRD, Ifremer, 98719, Tahiti, French Polynesia, France.ORCID http://orcid.org/0000-0003-1188-1467
Pierre PontarottiAix Marseille Université, IRD, APHM, MEPHI, IHU Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France.ORCID http://orcid.org/0000-0001-7202-3648
Centre National de la Recherche Scientifique · FRSorbonne Université · FRSultan Qaboos University · OM

Funding

Agence Nationale de la Recherche ANR-11-LABX-0061Agence Nationale de la Recherche ANR-12-ADAP-0016
6 · The paper itself

Abstract

Correctly delimiting species and populations is a prerequisite for studies of connectivity, adaptation and conservation. Genomic data are particularly useful to test species differentiation for organisms with few informative morphological characters or low discrimination of cytoplasmic markers, as in Scleractinians. Here we applied Restriction site Associated DNA sequencing (RAD-sequencing) to the study of species differentiation and genetic structure in populations of Pocillopora spp. from Oman and French Polynesia, with the objectives to test species hypotheses, and to study the genetic structure among sampling sites within species. We focused here on coral colonies morphologically similar to P. acuta (damicornis type β). We tested the impact of different filtering strategies on the stability of the results. The main genetic differentiation was observed between samples from Oman and French Polynesia. These samples corresponded to different previously defined primary species hypotheses (PSH), i.e., PSHs 12 and 13 in Oman, and PSH 5 in French Polynesia. In Oman, we did not observe any clear differentiation between the two putative species PSH 12 and 13, nor between sampling sites. In French Polynesia, where a single species hypothesis was studied, there was no differentiation between sites. Our analyses allowed the identification of clonal lineages in Oman and French Polynesia. The impact of clonality on genetic diversity is discussed in light of individual-based simulations.

Indexed as

AnthozoaAnimalsGenetic StructuresMetagenomicsSequence Analysis, DNASpecies SpecificityClonal reproductionCoralGenetic structurePocilloporaRAD-sequencingSpecies delineation

Identifiers

PMID36083388
OpenAlexW4295023735

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.