Evidence map›Paper›PMID 36083009›Full record

ArticleGenetics2022

Marker-assisted mapping enables forward genetic analysis in Aedes aegypti, an arboviral vector with vast recombination deserts.

Chujia Chen, Austin Compton, Katerina Nikolouli, Aihua Wang, Azadeh Aryan, Atashi Sharma, Yumin Qi, Camden Dellinger, Melanie Hempel, Mark Potters and 4 more

Abstract read
In one paragraph

Article in Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Differential elimination of marked sex chromosomes enables production of nontransgenic male mosquitoes in a single strain.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Recovery of metagenomic data from theWellcome open research · 2023
    Article
  12. Review
  13. Article
  14. Article
  15. Introgression of theFrontiers in bioengineering and biotechnology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Chujia ChenGenetics Bioinformatics and Computational Biology Program, Virginia Tech, Blacksburg, VA 24061, USA.ORCID 0000-0002-9196-1274
Austin ComptonFralin Life Sciences Institute, Virginia Tech, Blacksburg, VA 24061, USA.
Katerina NikolouliInsect Pest Control Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, IAEA Laboratories, 2444 Seibersdorf, Austria.
Aihua WangFralin Life Sciences Institute, Virginia Tech, Blacksburg, VA 24061, USA.
Azadeh AryanFralin Life Sciences Institute, Virginia Tech, Blacksburg, VA 24061, USA.
Atashi SharmaFralin Life Sciences Institute, Virginia Tech, Blacksburg, VA 24061, USA.
Yumin QiFralin Life Sciences Institute, Virginia Tech, Blacksburg, VA 24061, USA.
Camden DellingerFralin Life Sciences Institute, Virginia Tech, Blacksburg, VA 24061, USA.
Melanie HempelFralin Life Sciences Institute, Virginia Tech, Blacksburg, VA 24061, USA.
Mark PottersFralin Life Sciences Institute, Virginia Tech, Blacksburg, VA 24061, USA.
Antonios AugustinosInsect Pest Control Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, IAEA Laboratories, 2444 Seibersdorf, Austria.ORCID 0000-0003-3682-6077
David W SeversonDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
Kostas BourtzisInsect Pest Control Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, IAEA Laboratories, 2444 Seibersdorf, Austria.ORCID 0000-0002-3999-4095
Zhijian TuGenetics Bioinformatics and Computational Biology Program, Virginia Tech, Blacksburg, VA 24061, USA.ORCID 0000-0003-4227-3819

Funding

Sex ratio distortion in Aedes aegyptiR01AI157491 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI TU, ZHIJIAN JAKE · 2020 to 2024
$3.1M
Mechanism and application of male determination in aedine mosquitoesR01AI123338 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI TU, ZHIJIAN JAKE · 2016 to 2020
$2.9M
NIAID NIH HHS R01 AI123338NIAID NIH HHS R01 AI157491
6 · The paper itself

Abstract

Aedes aegypti is a major vector of arboviruses that cause dengue, chikungunya, yellow fever, and Zika. Although recent success in reverse genetics has facilitated rapid progress in basic and applied research, integration of forward genetics with modern technologies remains challenging in this important species, as up to 47% of its chromosome is refractory to genetic mapping due to extremely low rate of recombination. Here, we report the development of a marker-assisted mapping strategy to readily screen for and genotype only the rare but informative recombinants, drastically increasing both the resolution and signal-to-noise ratio. Using marker-assisted mapping, we mapped a transgene that was inserted in a >100-Mb recombination desert and a sex-linked spontaneous red-eye (re) mutation just outside the region. We subsequently determined, by CRISPR/Cas9-mediated knockout, that cardinal is the causal gene of re, which is the first forward genetic identification of a causal gene in Ae. aegypti. The identification of the causal gene of the sex-linked re mutation provides the molecular foundation for using gene editing to develop versatile and stable genetic sexing methods. To facilitate genome-wide forward genetics in Ae. aegypti, we generated and compiled a number of lines with markers throughout the genome. Thus, by overcoming the challenges presented by the vast recombination deserts and the scarcity of markers, we have shown that effective forward genetic analysis is increasingly feasible in this important arboviral vector species.

Indexed as

AedesArbovirusesChikungunya FeverZika VirusZika Virus InfectionAnimalsMosquito VectorsRecombination, Geneticcardinalcausal genedengueeye colorhomomorphic sex chromosomesex locussex separationZika

Identifiers

PMID36083009
PMCPMC9630976

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.