Evidence map›Paper›PMID 36080793›Full record

ArticleSensors (Basel, Switzerland)2022

Performance and Robustness of Regional Image Segmentation Driven by Selected Evolutionary and Genetic Algorithms: Study on MR Articular Cartilage Images.

Jan Kubicek, Alice Varysova, Martin Cerny, Kristyna Hancarova, David Oczka, Martin Augustynek, Marek Penhaker, Ondrej Prokop, Radomir Scurek

Abstract read
In one paragraph

Article in Sensors (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jan KubicekDepartment of Cybernetics and Biomedical Engineering, VŠB-Technical University of Ostrava, 17.listopadu 2172/15, Poruba, 708 00 Ostrava, Czech Republic.
Alice VarysovaDepartment of Cybernetics and Biomedical Engineering, VŠB-Technical University of Ostrava, 17.listopadu 2172/15, Poruba, 708 00 Ostrava, Czech Republic.ORCID 0000-0002-2788-7794
Martin CernyDepartment of Cybernetics and Biomedical Engineering, VŠB-Technical University of Ostrava, 17.listopadu 2172/15, Poruba, 708 00 Ostrava, Czech Republic.ORCID 0000-0002-8893-2587
Kristyna HancarovaDepartment of Cybernetics and Biomedical Engineering, VŠB-Technical University of Ostrava, 17.listopadu 2172/15, Poruba, 708 00 Ostrava, Czech Republic.
David OczkaDepartment of Cybernetics and Biomedical Engineering, VŠB-Technical University of Ostrava, 17.listopadu 2172/15, Poruba, 708 00 Ostrava, Czech Republic.
Martin AugustynekDepartment of Cybernetics and Biomedical Engineering, VŠB-Technical University of Ostrava, 17.listopadu 2172/15, Poruba, 708 00 Ostrava, Czech Republic.ORCID 0000-0002-0165-7317
Marek PenhakerDepartment of Cybernetics and Biomedical Engineering, VŠB-Technical University of Ostrava, 17.listopadu 2172/15, Poruba, 708 00 Ostrava, Czech Republic.ORCID 0000-0001-9527-4642
Ondrej ProkopMEDIN, a.s., Vlachovicka 619, 592 31 Nove Mesto na Morave, Czech Republic.
Radomir ScurekDepartment of Security Services, Faculty of Safety Engineering, VŠB-Technical University of Ostrava, ul. Lumirova 3, 700 30 Ostrava, Czech Republic.ORCID 0000-0002-2971-9313

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The analysis and segmentation of articular cartilage magnetic resonance (MR) images belongs to one of the most commonly routine tasks in diagnostics of the musculoskeletal system of the knee area. Conventional regional segmentation methods, which are based either on the histogram partitioning (e.g., Otsu method) or clustering methods (e.g., K-means), have been frequently used for the task of regional segmentation. Such methods are well known as fast and well working in the environment, where cartilage image features are reliably recognizable. The well-known fact is that the performance of these methods is prone to the image noise and artefacts. In this context, regional segmentation strategies, driven by either genetic algorithms or selected evolutionary computing strategies, have the potential to overcome these traditional methods such as Otsu thresholding or K-means in the context of their performance. These optimization strategies consecutively generate a pyramid of a possible set of histogram thresholds, of which the quality is evaluated by using the fitness function based on Kapur's entropy maximization to find the most optimal combination of thresholds for articular cartilage segmentation. On the other hand, such optimization strategies are often computationally demanding, which is a limitation of using such methods for a stack of MR images. In this study, we publish a comprehensive analysis of the optimization methods based on fuzzy soft segmentation, driven by artificial bee colony (ABC), particle swarm optimization (PSO), Darwinian particle swarm optimization (DPSO), and a genetic algorithm for an optimal thresholding selection against the routine segmentations Otsu and K-means for analysis and the features extraction of articular cartilage from MR images. This study objectively analyzes the performance of the segmentation strategies upon variable noise with dynamic intensities to report a segmentation's robustness in various image conditions for a various number of segmentation classes (4, 7, and 10), cartilage features (area, perimeter, and skeleton) extraction preciseness against the routine segmentation strategies, and lastly the computing time, which represents an important factor of segmentation performance. We use the same settings on individual optimization strategies: 100 iterations and 50 population. This study suggests that the combination of fuzzy thresholding with an ABC algorithm gives the best performance in the comparison with other methods as from the view of the segmentation influence of additive dynamic noise influence, also for cartilage features extraction. On the other hand, using genetic algorithms for cartilage segmentation in some cases does not give a good performance. In most cases, the analyzed optimization strategies significantly overcome the routine segmentation methods except for the computing time, which is normally lower for the routine algorithms. We also publish statistical tests of significance, showing differences in the performance of individual optimization strategies against Otsu and K-means method. Lastly, as a part of this study, we publish a software environment, integrating all the methods from this study.

Indexed as

Cartilage, ArticularAlgorithmsArtifactsCluster AnalysisImage Processing, Computer-AssistedMagnetic Resonance ImagingABCarticular cartilageDPSOK-means clusteringmedical image segmentationOtsu thresholdingPSOregional segmentation

Identifiers

PMID36080793
PMCPMC9460494

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.