Evidence map›Paper›PMID 36078151›Full record

ArticleCells2022

Immune Determinants of Viral Clearance in Hospitalised COVID-19 Patients: Reduced Circulating Naïve CD4+ T Cell Counts Correspond with Delayed Viral Clearance.

Mihaela Zlei, Igor A Sidorov, Simone A Joosten, Mirjam H M Heemskerk, Sebenzile K Myeni, Cilia R Pothast, Caroline S de Brouwer, A Linda Boomaars-van der Zanden, Krista E van Meijgaarden, Shessy T Morales and 18 more

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Letter to the editor: Viral load decline time offers theoretical insight rather than practical value.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article
  6. Observational
  7. CD4Frontiers in cellular and infection microbiology · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2023
    Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 1 institution in 1 country.

Mihaela ZleiDepartment of Immunology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0002-6865-8883
Igor A SidorovClinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Simone A JoostenDepartment of Infectious Diseases, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0002-9878-0863
Mirjam H M HeemskerkDepartment of Hematology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Sebenzile K MyeniMolecular Virology Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0002-5813-0065
Cilia R PothastDepartment of Hematology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Caroline S de BrouwerClinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0001-9117-6658
A Linda Boomaars-van der ZandenMolecular Virology Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0003-2456-2158
Krista E van MeijgaardenDepartment of Infectious Diseases, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0003-2818-9805
Shessy T MoralesMolecular Virology Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Els WesselsClinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Jacqueline J JanseDepartment of Parasitology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Jelle J GoemanMedical Statistics Section, Department of Biomedical Data Sciences, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Christa M CobbaertDepartment of Clinical Chemistry and Laboratory Medicine, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Aloys C M KroesClinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Suzanne C CannegieterDepartment of Clinical Epidemiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Meta RoestenbergDepartment of Parasitology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0002-5052-2830
Leonardus G VisserDepartment of Infectious Diseases, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Marjolein KikkertMolecular Virology Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0002-5779-7386
Mariet C W FeltkampClinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Sesmu M ArbousDepartment of Clinical Epidemiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Frank J T StaalDepartment of Immunology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0003-1588-8519
Tom H M OttenhoffDepartment of Infectious Diseases, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0003-3706-3403
Jacques J M van DongenDepartment of Immunology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0002-3650-7087
Anna H E RoukensDepartment of Infectious Diseases, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Jutte J C de VriesClinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.ORCID 0000-0003-2530-6260
In Collaboration With Beat-Covid
In Collaboration With Lumc Covid
Leiden University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Virus-specific cellular and humoral responses are major determinants for protection from critical illness after SARS-CoV-2 infection. However, the magnitude of the contribution of each of the components to viral clearance remains unclear. Here, we studied the timing of viral clearance in relation to 122 immune parameters in 102 hospitalised patients with moderate and severe COVID-19 in a longitudinal design. Delayed viral clearance was associated with more severe disease and was associated with higher levels of SARS-CoV-2-specific (neutralising) antibodies over time, increased numbers of neutrophils, monocytes, basophils, and a range of pro-inflammatory cyto-/chemokines illustrating ongoing, partially Th2 dominating, immune activation. In contrast, early viral clearance and less critical illness correlated with the peak of neutralising antibodies, higher levels of CD4 T cells, and in particular naïve CD4+ T cells, suggesting their role in early control of SARS-CoV-2 possibly by proving appropriate B cell help. Higher counts of naïve CD4+ T cells also correlated with lower levels of MIF, IL-9, and TNF-beta, suggesting an indirect role in averting prolonged virus-induced tissue damage. Collectively, our data show that naïve CD4+ T cell play a critical role in rapid viral T cell control, obviating aberrant antibody and cytokine profiles and disease deterioration. These data may help in guiding risk stratification for severe COVID-19.

Indexed as

COVID-19Antibodies, ViralCD4-Positive T-LymphocytesCritical IllnessHumansSARS-CoV-2Antibodies, ViralCOVID-19naïve CD4+ T cellviral clearance

Identifiers

PMID36078151
PMCPMC9455062
OpenAlexW4294862360

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.