Evidence map›Paper›PMID 36077244›Full record

ArticleInternational journal of molecular sciences2022

Blood RNA Sequencing Indicates Upregulated

Irena Voinsky, Yazeed Zoabi, Noam Shomron, Moria Harel, Hanoch Cassuto, Joseph Tam, Shannon Rose, Adrienne C Scheck, Mohammad A Karim, Richard E Frye and 2 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Irena VoinskyDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel.ORCID 0000-0001-7782-3185
Yazeed ZoabiDepartment of Cell and Developmental Biology, Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel.ORCID 0000-0001-5501-0036
Noam ShomronDepartment of Cell and Developmental Biology, Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel.ORCID 0000-0001-9913-6124
Moria HarelShaare Zedek Medical Center, Jerusalem 91031, Israel.
Hanoch CassutoShaare Zedek Medical Center, Jerusalem 91031, Israel.
Joseph TamObesity and Metabolism Laboratory, Institute for Drug Research, School of Pharmacy, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel.ORCID 0000-0002-0948-0093
Shannon RoseDepartment of Pediatrics, University of Arkansas for Medical Sciences and Arkansas Children's Research Institute, Little Rock, AR 72205, USA.ORCID 0000-0003-0595-4367
Adrienne C ScheckBarrow Neurological Institute, Phoenix Children's Hospital, Phoenix, AZ 85016, USA.ORCID 0000-0003-3497-1895
Mohammad A KarimBarrow Neurological Institute, Phoenix Children's Hospital, Phoenix, AZ 85016, USA.
Richard E FryeBarrow Neurological Institute, Phoenix Children's Hospital, Phoenix, AZ 85016, USA.ORCID 0000-0003-4442-2937
Adi AranShaare Zedek Medical Center, Jerusalem 91031, Israel.ORCID 0000-0001-9460-4689
David GurwitzDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel.ORCID 0000-0002-9363-1869
Tel Aviv University · ILBarrow Neurological Institute · USHebrew University of Jerusalem · ILShaare Zedek Medical Center · ILArkansas Children's Hospital · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations in over 100 genes are implicated in autism spectrum disorder (ASD). DNA SNPs, CNVs, and epigenomic modifications also contribute to ASD. Transcriptomics analysis of blood samples may offer clues for pathways dysregulated in ASD. To expand and validate published findings of RNA-sequencing (RNA-seq) studies, we performed RNA-seq of whole blood samples from an Israeli discovery cohort of eight children with ASD compared with nine age- and sex-matched neurotypical children. This revealed 10 genes with differential expression. Using quantitative real-time PCR, we compared RNAs from whole blood samples of 73 Israeli and American children with ASD and 26 matched neurotypical children for the 10 dysregulated genes detected by RNA-seq. This revealed higher expression levels of the pro-inflammatory transcripts

Indexed as

Autism Spectrum DisorderNeoplasmsAntigens, SurfaceCytokinesExome SequencingGene Expression ProfilingGPI-Linked ProteinsHumansMetallothioneinSequence Analysis, RNAUbiquitinsAntigens, SurfaceCytokinesGPI-Linked ProteinsISG15 protein, humanLY6E protein, humanMetallothioneinMT2A protein, humanUbiquitinsautism spectrum disorder (ASD)cancerreal-time qPCRRNA sequencing

Identifiers

PMID36077244
PMCPMC9456089
OpenAlexW4293708198

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.