Evidence map›Paper›PMID 36077128›Full record

ArticleInternational journal of molecular sciences2022

Complete Genome Sequence Analysis of

Raguchander Thiruvengadam, Karthikeyan Gandhi, Sendhilvel Vaithiyanathan, Harish Sankarasubramanian, Karthiba Loganathan, Rajendran Lingan, Veera Ranjani Rajagopalan, Raveendran Muthurajan, Jonathan Ebenezer Iyadurai, Prabakar Kuppusami

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 37 citations in OpenAlex.

  1. Genomic exploration ofMicrobiology spectrum · 2026
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  6. Journal of microbiology and biotechnology · 2026
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  7. Whole-Genome Analysis of PGP EndophyticInternational journal of molecular sciences · 2025
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  12. Whole-Genome analysis ofAIMS microbiology · 2025
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  13. New Occurrence ofMicroorganisms · 2024
    Article
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  16. Whole genome analysis ofMicrobiology spectrum · 2024
    Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Raguchander ThiruvengadamDepartment of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.ORCID 0000-0001-5423-285X
Karthikeyan GandhiDepartment of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.
Sendhilvel VaithiyanathanDepartment of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.ORCID 0000-0002-3742-5577
Harish SankarasubramanianDepartment of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.ORCID 0000-0001-5703-9887
Karthiba LoganathanDepartment of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.
Rajendran LinganDepartment of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.ORCID 0000-0001-8840-7419
Veera Ranjani RajagopalanDepartment of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.ORCID 0000-0002-2875-5451
Raveendran MuthurajanDepartment of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.ORCID 0000-0002-8803-7662
Jonathan Ebenezer IyaduraiDepartment of Nematology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.
Prabakar KuppusamiDepartment of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India.
Tamil Nadu Agricultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant growth-promoting rhizobacteria (PGPR) are a group of root-associated beneficial bacteria emerging as one of the powerful agents in sustainable plant disease management. Among the PGPR, Bacillus sp. has become a popular biocontrol agent for controlling pests and the diseases of several crops of agricultural and horticultural importance. Understanding the molecular basis of the plant growth-promoting and biocontrol abilities of Bacillus spp. will allow us to develop multifunctional microbial consortia for sustainable agriculture. In our study, we attempted to unravel the genome complexity of the potential biocontrol agent Bacillus subtilis Bbv57 (isolated from the betelvine’s rhizosphere), available at TNAU, Coimbatore. A WGS analysis generated 26 million reads, and a de novo assembly resulted in the generation of 4,302,465 bp genome of Bacillus subtilis Bbv57 containing 4363 coding sequences (CDS), of which 4281 were functionally annotated. An analysis of 16S rRNA revealed its 100% identity to Bacillus subtilis IAM 12118. A detailed data analysis identified the presence of >100 CAZymes and nine gene clusters involved in the production of secondary metabolites that exhibited antimicrobial properties. Further, Bbv57 was found to harbor 282 unique genes in comparison with 19 other Bacillus strains, requiring further exploration.

Indexed as

BacillusBacillus subtilisCrops, AgriculturalRNA, Ribosomal, 16SSequence AnalysisRNA, Ribosomal, 16SBacillus subtilisBbv57biocontrol agentPGPRsecondary metaboliteswhole genome sequence

Identifiers

PMID36077128
PMCPMC9456384
OpenAlexW4293676891

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.