Evidence map›Paper›PMID 36077073›Full record

ArticleInternational journal of molecular sciences2022

Absence of Gut Microbiota Is Associated with RPE/Choroid Transcriptomic Changes Related to Age-Related Macular Degeneration Pathobiology and Decreased Choroidal Neovascularization.

Jason Y Zhang, Bingqing Xie, Hugo Barba, Urooba Nadeem, Asadolah Movahedan, Nini Deng, Melanie Spedale, Mark D'Souza, Wendy Luo, Vanessa Leone and 4 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  4. Role of gut microbiomes in different ocular pathologies: A systematic review.World journal of gastrointestinal pathophysiology · 2025
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  16. Gut microbiota and eye diseases: a bibliometric study and visualization analysis.Frontiers in cellular and infection microbiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Jason Y ZhangDepartment of Ophthalmology and Visual Science, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0003-4632-7730
Bingqing XieDepartment of Medicine, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0001-9246-9321
Hugo BarbaDepartment of Ophthalmology and Visual Science, University of Chicago, Chicago, IL 60637, USA.
Urooba NadeemDepartment of Pathology, University of Chicago, Chicago, IL 60637, USA.
Asadolah MovahedanDepartment of Ophthalmology and Visual Science, Yale University School of Medicine, New Haven, CT 06510, USA.
Nini DengDepartment of Ophthalmology and Visual Science, University of Chicago, Chicago, IL 60637, USA.
Melanie SpedaleAnimal Resources Center, University of Chicago, Chicago, IL 60637, USA.
Mark D'SouzaDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Wendy LuoDepartment of Ophthalmology and Visual Science, University of Chicago, Chicago, IL 60637, USA.
Vanessa LeoneDepartment of Animal Biologics and Metabolism, University of Wisconsin, Madison, WI 53706, USA.ORCID 0000-0003-4012-4377
Eugene B ChangDepartment of Medicine, University of Chicago, Chicago, IL 60637, USA.
Betty TheriaultAnimal Resources Center, University of Chicago, Chicago, IL 60637, USA.
Dinanath SulakheDuchossois Family Institute, University of Chicago, Chicago, IL 60637, USA.
Dimitra SkondraDepartment of Ophthalmology and Visual Science, University of Chicago, Chicago, IL 60637, USA.
University of Chicago · USUniversity of Wisconsin–Madison · USYale University · US

Funding

ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 1990 to 2025
$29.8M
BrightFocus Foundation M2018042Fight for Sight Jason ZhangIllinois Society for the Prevention of Blindness FP067271Illinois Society for the Prevention of Blindness FP105445NIDDK NIH HHS DK42086NIDDK NIH HHS P30 DK042086The University of Chicago Women's Board Dimitra Skondra
6 · The paper itself

Abstract

Studies have begun to reveal significant connections between the gut microbiome and various retinal diseases, including age-related macular degeneration (AMD). As critical supporting tissues of the retina, the retinal pigment epithelium (RPE) and underlying choroid play a critical role in retinal homeostasis and degeneration. However, the relationship between the microbiome and RPE/choroid remains poorly understood, particularly in animal models of AMD. In order to better elucidate this role, we performed high-throughput RNA sequencing of RPE/choroid tissue in germ-free (GF) and specific pathogen-free (SPF) mice. Furthermore, utilizing a specialized laser-induced choroidal neovascularization (CNV) model that we developed, we compared CNV size and inflammatory response between GF and SPF mice. After correction of raw data, 660 differentially expressed genes (DEGs) were identified, including those involved in angiogenesis regulation, scavenger and cytokine receptor activity, and inflammatory response-all of which have been implicated in AMD pathogenesis. Among lasered mice, the GF group showed significantly decreased CNV lesion size and microglial infiltration around CNV compared to the SPF group. Together, these findings provide evidence for a potential gut-RPE/choroidal axis as well as a correlation with neovascular features of AMD.

Indexed as

Choroidal NeovascularizationGastrointestinal MicrobiomeMacular DegenerationAnimalsChoroidMiceMice, Inbred C57BLRetinal Pigment EpitheliumTranscriptomeage-related macular degenerationangiogenesischoroidal neovascularizationgerm-free micegut microbiomegut–retina axismicrogliaRNA sequencingRPE–choroid

Identifiers

PMID36077073
PMCPMC9456402
OpenAlexW4293536475

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.