Evidence map›Paper›PMID 36076954›Full record

ArticleInternational journal of molecular sciences2022

Vps21 Directs the PI3K-PI(3)P-Atg21-Atg16 Module to Phagophores via Vps8 for Autophagy.

Lei Zhao, Weiming You, Dan Sun, Hui Xu, Xia You, Haiqian Xu, Zulin Wu, Zhiping Xie, Yongheng Liang

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Rab14 promotes Parkin-mediated mitophagy.Molecular biology of the cell · 2025
    Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. International journal of molecular sciences · 2023
    Article
  9. Special Issue: Yeast Cell Signaling Pathways (Volume 1).International journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lei ZhaoKey Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Weiming YouKey Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Dan SunKey Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Hui XuKey Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Xia YouKey Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Haiqian XuKey Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Zulin WuKey Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Zhiping XieSchool of Life Sciences and Technology, Shanghai Jiao Tong University, Shanghai 200240, China.
Yongheng LiangKey Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-5430-2042
Nanjing Agricultural University · CNShanghai Jiao Tong University · CN

Funding

National Natural Science Foundation of China 31671479, 91954125, 31871428
6 · The paper itself

Abstract

Phosphatidylinositol 3-phosphate (PI(3)P) serves important functions in endocytosis, phagocytosis, and autophagy. PI(3)P is generated by Vps34 of the class III phosphatidylinositol 3-kinase (PI3K) complex. The Vps34-PI3K complex can be divided into Vps34-PI3K class II (containing Vps38, endosomal) and Vps34-PI3K class I (containing Atg14, autophagosomal). Most PI(3)Ps are associated with endosomal membranes. In yeast, the endosomal localization of Vps34 and PI(3)P is tightly regulated by Vps21-module proteins. At yeast phagophore assembly site (PAS) or mammalian omegasomes, PI(3)P binds to WD-repeat protein interacting with phosphoinositide (WIPI) proteins to further recruit two conjugation systems, Atg5-Atg12·Atg16 and Atg8-PE (LC3-II), to initiate autophagy. However, the spatiotemporal regulation of PI(3)P during autophagy remains obscure. Therefore, in this study, we determined the effect of Vps21 on localization and interactions of Vps8, Vps34, Atg21, Atg8, and Atg16 upon autophagy induction. The results showed that Vps21 was required for successive colocalizations and interactions of Vps8-Vps34 and Vps34-Atg21 on endosomes, and Atg21-Atg8/Atg16 on the PAS. In addition to disrupted localization of the PI3K complex II subunits Vps34 and Vps38 on endosomes, the localization of the PI3K complex I subunits Vps34 and Atg14, as well as Atg21, was partly disrupted from the PAS in

Indexed as

AutophagosomesSaccharomyces cerevisiae ProteinsAnimalsAutophagyAutophagy-Related ProteinsEndopeptidasesMammalsPhosphatidylinositol 3-KinasePhosphatidylinositol 3-KinasesPhosphatidylinositol Phosphatesrab GTP-Binding ProteinsSaccharomyces cerevisiaeATG16 protein, S cerevisiaeATG21 protein, S cerevisiaeAutophagy-Related ProteinsEndopeptidasesPhosphatidylinositol 3-KinasePhosphatidylinositol 3-Kinasesphosphatidylinositol 3-phosphatePhosphatidylinositol Phosphatesrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsVPS21 protein, S cerevisiaeAtg21endosomesphagophore assembly sitephosphatidylinositol 3-phosphatethe PI3K complexVps21Vps8

Identifiers

PMID36076954
PMCPMC9455592
OpenAlexW4293230646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.