Evidence map›Paper›PMID 36076202›Full record

ArticleBMC medicine2022

Dissection of transcriptome dysregulation and immune characterization in women with germline BRCA1 mutation at single-cell resolution.

Xuexin Yu, Wanrun Lin, Alexandra Spirtos, Yan Wang, Hao Chen, Jianfeng Ye, Jessica Parker, Ci Ci Liu, Yiying Wang, Gabriella Quinn and 6 more

Open access · goldAbstract read
In one paragraph

Article in BMC medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Xuexin Yu *Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA.
Wanrun Lin *Department of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Alexandra Spirtos *Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Yan WangDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Hao ChenDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Jianfeng YeLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA.
Jessica ParkerDepartment of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Ci Ci LiuDepartment of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Yiying WangDepartment of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Gabriella QuinnLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA.
Feng ZhouDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Setsuko K ChambersDepartment of Obstetrics and Gynecology, The University of Arizona Cancer Center, University of Arizona, Tucson, AZ, USA.
Cheryl LewisHarold C. Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA.
Jayanthi LeaDepartment of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, USA. Jayanthi.Lea@UTSouthwestern.edu.
Bo LiLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA. Bo.Li@UTSouthwestern.edu.
Wenxin ZhengDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA. wenxin.zheng@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · USSouthwestern Medical CenterUniversity of Arizona Cancer CenterUniversity of Rochester Medical Center · US

Funding

Tracking Peripheral T-Cell Repertoire Changes for Preoperative and Early Ovarian Cancer DiagnosisR01CA258524 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Jayanthi S Lea, Bo Li · 2022 to 2026
$3.8M
Antigen-independent prediction and biomarker identification of cancer-specific T cellsR01CA245318 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI LI, BO · 2020 to 2024
$1.9M
NCI NIH HHS R01 CA245318
6 · The paper itself

Abstract

backgroundHigh-grade serous carcinoma (HGSC) is the most frequent and lethal type of ovarian cancer. It has been proposed that tubal secretory cells are the origin of ovarian HGSC in women with familial BRCA1/2 mutations. However, the molecular changes underlying malignant transformation remain unknown.

methodWe performed single-cell RNA and T cell receptor sequencing of tubal fimbriated ends from 3 BRCA1 germline mutation carriers (BRCA1 carriers) and 3 normal controls with no high-risk history (non-BRCA1 carriers).

resultsExploring the transcriptomes of 19,008 cells, predominantly from BRCA1

conclusionThese results indicate that EMT and immune evasion in normal-looking tubal mucosae may represent early events leading to the development of HGSC in women with BRCA1 germline mutation. Our findings provide a probable molecular mechanism explaining why some, but not all, women with BRCA1 germline mutation present with early development and rapid dissemination of HGSC.

Indexed as

Fallopian Tube NeoplasmsOvarian NeoplasmsBRCA1 ProteinCD8-Positive T-LymphocytesFemaleGerm CellsHumansMutationTranscriptomeBRCA1 ProteinBRCA1 protein, humanBRCA1 mutationEpithelial to mesenchymal transitionFallopian tubeHigh-grade serous carcinomaOvarian cancerSingle-cell RNA sequencingT cell exhaustion

Identifiers

PMID36076202
PMCPMC9461201
OpenAlexW4295078884

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.