ArticleBMC genomics2022
Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L.
Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed.
- New generic classification for Korean Peucedanum L. (Apiaceae) species based on deep phylogenomic study.BMC plant biology · 2026Article
- Chloroplast genome comparison, phylogeny, and molecular evolution of five endemic Potentilla (Rosaceae) species in Mongolia.Genetica · 2026Article
- Phylogenomic and metabolomic approaches to provide insight for species delimitation of cultivatedFrontiers in plant science · 2026Article
- The complete chloroplast genome ofFrontiers in plant science · 2026Article
- Chloroplast genome sequencing and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2026Article
- Plastome comparison and phylogenomic analysis of threatened wild Egyptian Capparis taxa.BMC genomics · 2025Article
- Development of molecular markers for marker-assisted breeding and quality evaluation of Aconitum carmichaelii cultivars.BMC plant biology · 2025Article
- Pan-Plastome Analysis Reveals the Genetic Diversity and Genetic Divergence ofInternational journal of molecular sciences · 2025Article
- Phylogeny and evolutionary dynamics of the Rubia genus based on the chloroplast genome of Rubia tibetica.Scientific reports · 2025Article
- Creating an effective DNA identification system for discriminating cherries (Prunus subgenus Cerasus).BMC plant biology · 2025Article
- The complete chloroplast genome sequences of monotypic genus Pseudogalium, and comparative analyses with its relative genera.BMC genomics · 2025Article
- Intracellular gene transfer (IGT) events from the mitochondrial genome to the plastid genome of the subtribe ferulinae drude (Apiaceae) and their implications.BMC plant biology · 2024Article
- Article
- The complete Chloroplast genome of Stachys geobombycis and comparative analysis with related Stachys species.Scientific reports · 2024Article
- Assembly, annotation and analysis of the chloroplast genome of the Algarrobo tree Neltuma pallida (subfamily: Caesalpinioideae).BMC plant biology · 2023Article
- Complete chloroplast genomes of Cerastium alpinum, C. arcticum and C. nigrescens: genome structures, comparative and phylogenetic analysis.Scientific reports · 2023Article
- The Main Medicinal Plants in Arid Regions of Uzbekistan and Their Traditional Use in Folk Medicine.Plants (Basel, Switzerland) · 2023Article
- Article
- The Complete Chloroplast Genomes ofGenes · 2023Article
- Maternal Donor and Genetic Variation ofInternational journal of molecular sciences · 2023Article
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6 authors.
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Abstract
backgroundFerula L. is one of the largest and most taxonomically complicated genera as well as being an important medicinal plant resource in the family Apiaceae. To investigate the plastome features and phylogenetic relationships of Ferula and its neighboring genera Soranthus Ledeb., Schumannia Kuntze., and Talassia Korovin, we sequenced 14 complete plastomes of 12 species.
resultsThe size of the 14 complete chloroplast genomes ranged from 165,607 to 167,013 base pairs (bp) encoding 132 distinct genes (87 protein-coding, 37 tRNA, and 8 rRNA genes), and showed a typical quadripartite structure with a pair of inverted repeats (IR) regions. Based on comparative analysis, we found that the 14 plastomes were similar in codon usage, repeat sequence, simple sequence repeats (SSRs), and IR borders, and had significant collinearity. Based on our phylogenetic analyses, Soranthus, Schumannia, and Talassia should be considered synonymous with Ferula. Six highly divergent regions (rps16/trnQ-UUG, trnS-UGA/psbZ, psbH/petB, ycf1/ndhF, rpl32, and ycf1) were also detected, which may represent potential molecular markers, and combined with selective pressure analysis, the weak positive selection gene ccsA may be a discriminating DNA barcode for Ferula species.
conclusionPlastids contain abundant informative sites for resolving phylogenetic relationships. Combined with previous studies, we suggest that there is still much room for improvement in the classification of Ferula. Overall, our study provides new insights into the plastome evolution, phylogeny, and taxonomy of this genus.
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