Evidence map›Paper›PMID 36075915›Full record

ArticleNature communications2022

Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro.

Mikhail A Hameedi, Erica T Prates, Michael R Garvin, Irimpan I Mathews, B Kirtley Amos, Omar Demerdash, Mark Bechthold, Mamta Iyer, Simin Rahighi, Daniel W Kneller and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 1 country.

Mikhail A Hameedi *SLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Structural Molecular Biology, Menlo Park, CA, 94025, USA.
Erica T Prates *National Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA.ORCID 0000-0002-6581-5054
Michael R GarvinNational Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA.
Irimpan I MathewsSLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Structural Molecular Biology, Menlo Park, CA, 94025, USA.ORCID 0000-0001-6254-3519
B Kirtley AmosDepartment of Horticulture, University of Kentucky, Lexington, KY, USA.ORCID 0000-0003-2152-2927
Omar DemerdashNational Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA.
Mark BechtholdDepartment of Structural Biology, Stanford University, Stanford, CA, 94305, USA.
Mamta IyerChapman University School of Pharmacy, Irvine, CA, 92618, USA.
Simin RahighiChapman University School of Pharmacy, Irvine, CA, 92618, USA.
Daniel W KnellerNational Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA.ORCID 0000-0002-5416-5789
Andrey KovalevskyNational Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA.ORCID 0000-0003-4459-9142
Stephan IrleComputational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.ORCID 0000-0003-4995-4991
Van-Quan VuongThe Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee Knoxville, Knoxville, TN, USA.ORCID 0000-0001-8580-8532
Julie C MitchellNational Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA.ORCID 0000-0002-5031-7343
Audrey LabbeNational Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA.
Stephanie GalanieNational Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA.
Soichi WakatsukiSLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Structural Molecular Biology, Menlo Park, CA, 94025, USA. soichi.wakatsuki@stanford.edu.ORCID 0000-0001-5896-7968
Daniel JacobsonNational Virtual Biotechnology Laboratory, US Department of Energy, Washington, DC, USA. jacobsonda@ornl.gov.ORCID 0000-0002-9822-8251
Oak Ridge National Laboratory · USChapman University · USSLAC National Accelerator Laboratory · USMerck & Co., Inc., Rahway, NJ, USA (United States) · USStanford University · USUnited States Department of Energy · USUniversity of Kentucky · USUniversity of Tennessee at Knoxville · US

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Aina E. Cohen, KEITH O HODGSON · 2020 to 2026
$43.3M
USING QUANTITATIVE TRAITS TO IDENTIFY NOVEL GENES FOR ALZHEIMERS DISEASE AND OTHER COMPLEX TRAITSRF1AG053303 · NIA · WASHINGTON UNIVERSITY · PI CLIMER, SHARLEE, CRUCHAGA, CARLOS · 2016 to 2020
$4.0M
NIA NIH HHS RF1 AG053303NIGMS NIH HHS P30 GM133894
6 · The paper itself

Abstract

In addition to its essential role in viral polyprotein processing, the SARS-CoV-2 3C-like protease (3CLpro) can cleave human immune signaling proteins, like NF-κB Essential Modulator (NEMO) and deregulate the host immune response. Here, in vitro assays show that SARS-CoV-2 3CLpro cleaves NEMO with fine-tuned efficiency. Analysis of the 2.50 Å resolution crystal structure of 3CLpro C145S bound to NEMO

Indexed as

COVID-19SARS-CoV-2Antiviral AgentsCysteine EndopeptidasesHumansPeptide HydrolasesProteinsAntiviral AgentsCysteine EndopeptidasesPeptide HydrolasesProteins

Identifiers

PMID36075915
PMCPMC9453703
OpenAlexW4295004938

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.