Evidence map›Paper›PMID 36075902›Full record

ArticleNature communications2022

Structure-function analysis of enterovirus protease 2A in complex with its essential host factor SETD3.

Christine E Peters, Ursula Schulze-Gahmen, Manon Eckhardt, Gwendolyn M Jang, Jiewei Xu, Ernst H Pulido, Conner Bardine, Charles S Craik, Melanie Ott, Or Gozani and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  5. An efficientJournal of virology · 2024
    Article
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  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Christine E Peters *Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Ursula Schulze-Gahmen *Gladstone Institute of Virology, The J. David Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0003-3919-4474
Manon EckhardtQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA.ORCID 0000-0001-8143-6129
Gwendolyn M JangQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA.ORCID 0000-0001-7806-9874
Jiewei XuQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA.
Ernst H PulidoQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA.ORCID 0000-0002-3616-9743
Conner BardineQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA.
Charles S CraikQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA.ORCID 0000-0001-7704-9185
Melanie OttGladstone Institute of Virology, The J. David Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0002-5697-1274
Or GozaniDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1365-4463
Kliment A VerbaQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA. Kliment.Verba@ucsf.edu.ORCID 0000-0002-2238-8590
Ruth HüttenhainQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA. Ruth.Huttenhain@ucsf.edu.ORCID 0000-0002-0896-5910
Jan E CaretteDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA. carette@stanford.edu.ORCID 0000-0002-5187-8070
Nevan J KroganQBI Coronavirus Research Group (QCRG), San Francisco, CA, USA. nevan.krogan@ucsf.edu.ORCID 0000-0003-4902-337X
Gladstone Institutes · USUniversity of California, San Francisco · USStanford University · USQB3 · USStanford Medicine · US

Funding

Targeting Viroporins and Coronavirus M ProteinU19AI171110 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Nevan J Krogan · 2022 to 2026
$103.4M
Translation Accelerator CoreU19AI171421 · NIAID · STANFORD UNIVERSITY · PI JEFFREY S GLENN · 2022 to 2026
$93.4M
RESEARCH PROJECT 2U19AI135990 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Nevan J Krogan · 2018 to 2026
$21.4M
X-ray Screening and Rapid Structure DeterminationP50AI150476 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EMERMAN, MICHAEL · 2019 to 2021
$14.4M
MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Function of Protein Methylation in Chromatin and Signaling RegulationR35GM139569 · NIGMS · STANFORD UNIVERSITY · PI Or P. Gozani · 2021 to 2026
$4.0M
Research Training in Chemistry and Chemical BiologyT32GM145460 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jason E Gestwicki · 2022 to 2026
$3.1M
Host determinants of enterovirus RNA replication and in vivo neuropathogenesisR01AI153169 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2021 to 2025
$2.7M
Genetic screens to find critical host factors for SARS-CoV-2 infectionR01AI140186 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2019 to 2023
$2.3M
Host determinants of adeno-associated virus entry and traffickingR01AI130123 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2018 to 2022
$2.0M
Host Genes Critical for Flavivirus InfectionR01AI141970 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2019 to 2023
$2.0M
CLINICAL/IMMUNOLOGIC/GENETIC ANALYSES OF AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROMEZ01AI000732 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI RAO, VEMULKONDA · 1995 to 2008
$1.1M
Intramural NIH HHS Z01 AI000732NIAID NIH HHS P50 AI150476NIAID NIH HHS R01 AI130123NIAID NIH HHS R01 AI140186NIAID NIH HHS R01 AI141970NIAID NIH HHS R01 AI153169NIAID NIH HHS T32 AI007328NIAID NIH HHS U19 AI135990NIAID NIH HHS U19 AI171110NIAID NIH HHS U19 AI171421NIGMS NIH HHS R35 GM139569NIGMS NIH HHS T32 GM145460
6 · The paper itself

Abstract

Enteroviruses cause a number of medically relevant and widespread human diseases with no approved antiviral therapies currently available. Host-directed therapies present an enticing option for this diverse genus of viruses. We have previously identified the actin histidine methyltransferase SETD3 as a critical host factor physically interacting with the viral protease 2A. Here, we report the 3.5 Å cryo-EM structure of SETD3 interacting with coxsackievirus B3 2A at two distinct interfaces, including the substrate-binding surface within the SET domain. Structure-function analysis revealed that mutations of key residues in the SET domain resulted in severely reduced binding to 2A and complete protection from enteroviral infection. Our findings provide insight into the molecular basis of the SETD3-2A interaction and a framework for the rational design of host-directed therapeutics against enteroviruses.

Indexed as

EnterovirusEnterovirus InfectionsAntigens, ViralEndopeptidasesHistone MethyltransferasesHumansPeptide HydrolasesAntigens, ViralEndopeptidasesHistone MethyltransferasesPeptide HydrolasesSETD3 protein, human

Identifiers

PMID36075902
PMCPMC9453702
OpenAlexW4295004907

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.