Evidence map›Paper›PMID 36073872›Full record

ArticleJournal of synchrotron radiation2022

Fixed-target serial crystallography at the Structural Biology Center.

Darren A Sherrell, Alex Lavens, Mateusz Wilamowski, Youngchang Kim, Ryan Chard, Krzysztof Lazarski, Gerold Rosenbaum, Rafael Vescovi, Jessica L Johnson, Chase Akins and 5 more

Open access · goldAbstract read
In one paragraph

Article in Journal of synchrotron radiation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Anaerobic fixed-target serial crystallography using sandwiched silicon nitride membranes.Acta crystallographica. Section D, Structural biology · 2023
    Article
  7. Article
  8. A standard descriptor for fixed-target serial crystallography.Acta crystallographica. Section D, Structural biology · 2023
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Darren A SherrellStructural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0002-6393-8800
Alex LavensStructural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Mateusz WilamowskiCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60667, USA.ORCID 0000-0001-8760-0700
Youngchang KimStructural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0002-1610-4889
Ryan ChardData Science and Learning Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Krzysztof LazarskiStructural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Gerold RosenbaumStructural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0001-6147-1023
Rafael VescoviData Science and Learning Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0002-0652-1128
Jessica L JohnsonBiosciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Chase AkinsBiosciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Changsoo ChangStructural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0003-1860-2969
Karolina MichalskaStructural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0001-7140-3649
Gyorgy BabniggBiosciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0002-9838-1803
Ian FosterData Science and Learning Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0003-2129-5269
Andrzej JoachimiakStructural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA.ORCID 0000-0003-2535-6209
Argonne National Laboratory · USUniversity of Chicago · US

Funding

Biological and Environmental Research DE-AC02-06CH11357NIAID NIH HHS HHSN272201200026CNIAID NIH HHS HHSN272201700060COffice of Science DE-AC02-06CH11357
6 · The paper itself

Abstract

Serial synchrotron crystallography enables the study of protein structures under physiological temperature and reduced radiation damage by collection of data from thousands of crystals. The Structural Biology Center at Sector 19 of the Advanced Photon Source has implemented a fixed-target approach with a new 3D-printed mesh-holder optimized for sample handling. The holder immobilizes a crystal suspension or droplet emulsion on a nylon mesh, trapping and sealing a near-monolayer of crystals in its mother liquor between two thin Mylar films. Data can be rapidly collected in scan mode and analyzed in near real-time using piezoelectric linear stages assembled in an XYZ arrangement, controlled with a graphical user interface and analyzed using a high-performance computing pipeline. Here, the system was applied to two β-lactamases: a class D serine β-lactamase from Chitinophaga pinensis DSM 2588 and L1 metallo-β-lactamase from Stenotrophomonas maltophilia K279a.

Indexed as

Stenotrophomonas maltophiliaBiologyCrystallographyProteinsProteinsfixed-target serial synchrotron crystallographystructural biologyX-ray free-electron lasers

Identifiers

PMID36073872
PMCPMC9455217
OpenAlexW4292104481

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.