Evidence map›Paper›PMID 36073550›Full record

ArticleThe New phytologist2023

Arabidopsis latent virus 1, a comovirus widely spread in Arabidopsis thaliana collections.

Ava Verhoeven, Karen J Kloth, Anne Kupczok, Geert H Oymans, Janna Damen, Karin Rijnsburger, Zhang Jiang, Cas Deelen, Rashmi Sasidharan, Martijn van Zanten and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Ava VerhoevenLaboratory of Virology, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB, Wageningen, the Netherlands.ORCID 0000-0001-9139-9050
Karen J KlothLaboratory of Entomology, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB, Wageningen, the Netherlands.ORCID 0000-0002-0379-5473
Anne KupczokBioinformatics Group, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB, Wageningen, the Netherlands.ORCID 0000-0001-5237-1899
Geert H OymansLaboratory of Virology, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB, Wageningen, the Netherlands.
Janna DamenLaboratory of Virology, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB, Wageningen, the Netherlands.ORCID 0000-0002-8450-7102
Karin RijnsburgerLaboratory of Virology, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB, Wageningen, the Netherlands.
Zhang JiangPlant-Environment Signaling, Utrecht University, Padualaan 8, 3584 CH, Utrecht, the Netherlands.
Cas DeelenPlant-Environment Signaling, Utrecht University, Padualaan 8, 3584 CH, Utrecht, the Netherlands.
Rashmi SasidharanPlant-Environment Signaling, Utrecht University, Padualaan 8, 3584 CH, Utrecht, the Netherlands.ORCID 0000-0002-6940-0657
Martijn van ZantenPlant Stress Resilience, Utrecht University, Padualaan 8, 3584 CH, Utrecht, the Netherlands.ORCID 0000-0002-2810-7374
René A A van der VlugtLaboratory of Virology, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB, Wageningen, the Netherlands.ORCID 0000-0001-9094-685X
Utrecht University · NLWageningen University & Research · NLBioInteractions (United Kingdom) · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcriptome studies of Illumina RNA-Seq datasets of different Arabidopsis thaliana natural accessions and T-DNA mutants revealed the presence of two virus-like RNA sequences which showed the typical two-segmented genome characteristics of a comovirus. This comovirus did not induce any visible symptoms in infected A. thaliana plants cultivated under standard laboratory conditions. Hence it was named Arabidopsis latent virus 1 (ArLV1). Virus infectivity in A. thaliana plants was confirmed by quantitative reverse transcription polymerase chain reaction, transmission electron microscopy and mechanical inoculation. Arabidopsis latent virus 1 can also mechanically infect Nicotiana benthamiana, causing distinct mosaic symptoms. A bioinformatics investigation of A. thaliana RNA-Seq repositories, including nearly 6500 Sequence Read Archives (SRAs) in the NCBI SRA database, revealed the presence of ArLV1 in 25% of all archived natural A. thaliana accessions and in 8.5% of all analyzed SRAs. Arabidopsis latent virus 1 could also be detected in A. thaliana plants collected from the wild. Arabidopsis latent virus 1 is highly seed-transmissible with up to 40% incidence on the progeny derived from infected A. thaliana plants. This has probably led to a worldwide distribution in the model plant A. thaliana with as yet unknown effects on plant performance in a substantial number of studies.

Indexed as

ArabidopsisComovirusPlant DiseasesRNA, ViralRNA, ViralArabidopsis latent virus 1 (ArLV1)Arabidopsis thalianacomovirusdrought resilienceRNA sequencingsequence read archives

Identifiers

PMID36073550
PMCPMC10087574
OpenAlexW4294991134

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.