Evidence map›Paper›PMID 36073082›Full record

ArticleBiotechnology and bioengineering2022

De novo assembly and annotation of the CHOZN® GS

Corey Kretzmer, Rajagopalan Lakshmi Narasimhan, Rahul Deva Lal, Vincent Balassi, James Ravellette, Ajaya Kumar Kotekar Manjunath, Jesvin Joy Koshy, Marta Viano, Serena Torre, Valeria M Zanda and 10 more

Abstract read
In one paragraph

Article in Biotechnology and bioengineering, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Cell Engineering for Increasing Production of Recombinant Proteins in Mammalian Cells.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. The 'Omics Revolution in CHO Biology: Roadmap to Improved CHO Productivity.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. De novo assembly and annotation of the CHOZN® GSBiotechnology and bioengineering · 2022
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Corey KretzmerUpstream Research and Development, MilliporeSigma, St. Louis, Missouri, USA.
Rajagopalan Lakshmi NarasimhanBioinformatics, IT R&D Applications, Merck (Sigma-Aldrich Chemicals Pvt. Ltd., A subsidiary of Merck KGaA, Darmstadt, Germany), Bangalore, India.
Rahul Deva LalBioinformatics, IT R&D Applications, Merck (Sigma-Aldrich Chemicals Pvt. Ltd., A subsidiary of Merck KGaA, Darmstadt, Germany), Bangalore, India.
Vincent BalassiUpstream Research and Development, MilliporeSigma, St. Louis, Missouri, USA.
James RavelletteUpstream Research and Development, MilliporeSigma, St. Louis, Missouri, USA.
Ajaya Kumar Kotekar ManjunathBioinformatics, IT R&D Applications, Merck (Sigma-Aldrich Chemicals Pvt. Ltd., A subsidiary of Merck KGaA, Darmstadt, Germany), Bangalore, India.
Jesvin Joy KoshyBioinformatics, IT R&D Applications, Merck (Sigma-Aldrich Chemicals Pvt. Ltd., A subsidiary of Merck KGaA, Darmstadt, Germany), Bangalore, India.
Marta VianoIstituto di Ricerche Biomediche "A. Marxer" RBM S.p.A., Ivrea, Italy.
Serena TorreIstituto di Ricerche Biomediche "A. Marxer" RBM S.p.A., Ivrea, Italy.
Valeria M ZandaIstituto di Ricerche Biomediche "A. Marxer" RBM S.p.A., Ivrea, Italy.
Mausam KumravatBioinformatics, IT R&D Applications, Merck (Sigma-Aldrich Chemicals Pvt. Ltd., A subsidiary of Merck KGaA, Darmstadt, Germany), Bangalore, India.
Keith Metelo Raul SaldanhaBioinformatics, IT R&D Applications, Merck (Sigma-Aldrich Chemicals Pvt. Ltd., A subsidiary of Merck KGaA, Darmstadt, Germany), Bangalore, India.
Harikrishnan ChandranpillaiBioinformatics, IT R&D Applications, Merck (Sigma-Aldrich Chemicals Pvt. Ltd., A subsidiary of Merck KGaA, Darmstadt, Germany), Bangalore, India.
Ifra NihadBioinformatics, IT R&D Applications, Merck (Sigma-Aldrich Chemicals Pvt. Ltd., A subsidiary of Merck KGaA, Darmstadt, Germany), Bangalore, India.
Fei ZhongLife Science Bioinformatics, IT, MilliporeSigma, St. Louis, Missouri, USA.
Yi SunBioinformatics, IT R&D Applications, MilliporeSigma, St. Louis, Missouri, USA.
Jason GustinUpstream Research and Development, MilliporeSigma, St. Louis, Missouri, USA.
Trissa BorgschulteUpstream Research and Development, MilliporeSigma, St. Louis, Missouri, USA.
Jiajian LiuLife Science Bioinformatics, IT, MilliporeSigma, St. Louis, Missouri, USA.
David RazafskyUpstream Research and Development, MilliporeSigma, St. Louis, Missouri, USA.ORCID 0000-0001-6292-0169

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chinese hamster ovary (CHO) cells have been used as the industry standard for the production of therapeutic monoclonal antibodies for several decades. Despite significant improvements in commercial-scale production processes and media, the CHO cell has remained largely unchanged. Due to the cost and complexity of whole-genome sequencing and gene-editing it has been difficult to obtain the tools necessary to improve the CHO cell line. With the advent of next-generation sequencing and the discovery of the CRISPR/Cas9 system it has become more cost effective to sequence and manipulate the CHO genome. Here, we provide a comprehensive de novo assembly and annotation of the CHO-K1 based CHOZN® GS

Indexed as

CRISPR-Cas SystemsGenomeAnimalsCHO CellsCricetinaeCricetulusRNA, Guide, CRISPR-Cas SystemsRNA, Guide, CRISPR-Cas SystemsBioprocessingcell line engineeringChinese hamster ovaryCRISPRgenome-wide pooled screens

Identifiers

PMID36073082
PMCPMC9825924

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.