Evidence map›Paper›PMID 36072435›Full record

ArticleFrontiers in molecular biosciences2022

A single molecule investigation of i-motif stability, folding intermediates, and potential as

Golam Mustafa, Prabesh Gyawali, Jacob A Taylor, Parastoo Maleki, Marlon V Nunez, Michael C Guntrum, Sajad Shiekh, Hamza Balci

Abstract read
In one paragraph

Article in Frontiers in molecular biosciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Golam MustafaDepartment of Physics, Kent State University, Kent, OH, United States.
Prabesh GyawaliDepartment of Physics, Kent State University, Kent, OH, United States.
Jacob A TaylorDepartment of Physics, Kent State University, Kent, OH, United States.
Parastoo MalekiDepartment of Physics, Kent State University, Kent, OH, United States.
Marlon V NunezDepartment of Physics, Kent State University, Kent, OH, United States.
Michael C GuntrumDepartment of Physics, Kent State University, Kent, OH, United States.
Sajad ShiekhDepartment of Physics, Kent State University, Kent, OH, United States.
Hamza BalciDepartment of Physics, Kent State University, Kent, OH, United States.

Funding

Targeting Promoter G-quadruplexes with CRISPR-dCas9 for Transcription RegulationR15GM146180 · NIGMS · KENT STATE UNIVERSITY · PI BALCI, HAMZA · 2022 to 2023
$539k
Influence of small molecules on G-quadruplex stability, folding kinetics, and interactions with proteinsR15GM123443 · NIGMS · KENT STATE UNIVERSITY · PI BALCI, HAMZA · 2018 to 2018
$438k
NIGMS NIH HHS R15 GM123443NIGMS NIH HHS R15 GM146180
6 · The paper itself

Abstract

We present a collection of single molecule work on the i-motif structure formed by the human telomeric sequence. Even though it was largely ignored in earlier years of its discovery due to its modest stability and requirement for low pH levels (pH < 6.5), the i-motif has been attracting more attention recently as both a physiologically relevant structure and as a potent pH sensor. In this manuscript, we establish single molecule Förster resonance energy transfer (smFRET) as a tool to study the i-motif over a broad pH and ionic conditions. We demonstrate pH and salt dependence of i-motif formation under steady state conditions and illustrate the intermediate states visited during i-motif folding in real time at the single molecule level. We also show the prominence of intermediate folding states and reversible folding/unfolding transitions. We present an example of using the i-motif as an

Indexed as

folding intermediatesförster resonance energy transferFRETi-motifPH sensorsingle molecule

Identifiers

PMID36072435
PMCPMC9441956

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.