ArticleGenome biology2022
Genomic insights into the evolutionary history and diversification of bulb traits in garlic.
Article in Genome biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 29 citations in OpenAlex.
- Domestication and genome evolution iniScience · 2026Review
- Exploring candidate genes related to pollen abortion in garlic (Allium sativum) based on cytological studies and transcriptome sequencing.Journal of plant research · 2025Article
- Diallyl Trisulfide From Garlic Regulates RAB18 Phase Separation to Inhibit Lipophagy and Induce Cuproptosis in Hepatic Stellate Cells for Antifibrotic Effects.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- A single-cell transcriptomic atlas reveals the cell differentiation trajectory and the response to virus invasion in swelling clove of garlic.Horticulture research · 2025Article
- Integrated genome-wide association and transcriptomic studies reveal genetic architecture of bulb storability of plentiful garlic germplasm resources.Horticulture research · 2024Article
- Article
- Genetic and epigenetic signatures for improved breeding of cultivated blueberry.Horticulture research · 2024Article
- Genomic evidence for human-mediated introgressive hybridization and selection in the developed breed.BMC genomics · 2024Article
- Genomic insight into the origin, domestication, dispersal, diversification and human selection of Tartary buckwheat.Genome biology · 2024Article
- AlliumDB: a central portal for comparative and functional genomics inHorticulture research · 2024Article
- Genome-wide identification, characterization and expression analysis of theFrontiers in plant science · 2024Article
- Genome resequencing reveals the evolutionary history of garlic reproduction traits.Horticulture research · 2023Article
- Large-scale population structure and genetic architecture of agronomic traits of garlic.Horticulture research · 2023Article
- Genome-wide association study of 23 flowering phenology traits and 4 floral agronomic traits in tree peony (Horticulture research · 2023Article
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Authors and funding
30 authors at 7 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundGarlic is an entirely sterile crop with important value as a vegetable, condiment, and medicine. However, the evolutionary history of garlic remains largely unknown.
resultsHere we report a comprehensive map of garlic genomic variation, consisting of amazingly 129.4 million variations. Evolutionary analysis indicates that the garlic population diverged at least 100,000 years ago, and the two groups cultivated in China were domesticated from two independent routes. Consequently, 15.0 and 17.5% of genes underwent an expression change in two cultivated groups, causing a reshaping of their transcriptomic architecture. Furthermore, we find independent domestication leads to few overlaps of deleterious substitutions in these two groups due to separate accumulation and selection-based removal. By analysis of selective sweeps, genome-wide trait associations and associated transcriptomic analysis, we uncover differential selections for the bulb traits in these two garlic groups during their domestication.
conclusionsThis study provides valuable resources for garlic genomics-based breeding, and comprehensive insights into the evolutionary history of this clonal-propagated crop.
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