Evidence map›Paper›PMID 36071117›Full record

ArticleScientific reports2022

Photoacoustic imaging radiomics in patient-derived xenografts: a study on feature sensitivity and model discrimination.

Lorena Escudero Sanchez, Emma Brown, Leonardo Rundo, Stephan Ursprung, Evis Sala, Sarah E Bohndiek, Ignacio Xavier Partarrieu

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Lorena Escudero Sanchez *Department of Radiology, University of Cambridge, Cambridge, CB2 0QQ, UK. les44@cam.ac.uk.
Emma Brown *Department of Physics, University of Cambridge, Cambridge, CB3 0HE, UK.
Leonardo RundoDepartment of Radiology, University of Cambridge, Cambridge, CB2 0QQ, UK.
Stephan UrsprungDepartment of Radiology, University of Cambridge, Cambridge, CB2 0QQ, UK.
Evis SalaDepartment of Radiology, University of Cambridge, Cambridge, CB2 0QQ, UK.
Sarah E BohndiekDepartment of Physics, University of Cambridge, Cambridge, CB3 0HE, UK.
Ignacio Xavier PartarrieuIndependent Researcher, Cambridge, UK. ignpartarr+sn@hotmail.com.
Cancer Research UK Cambridge Center · GBUniversity of Cambridge · GBCancer Research UK · GBUniversity of Salerno · IT

Funding

Cancer Research UK 21142Cancer Research UK C42780/A27066Cancer Research UK C9545/A29580Cancer Research UK C9685/A25177Department of Health BRC-1215-20014Wellcome Trust 215733/Z/19/Z
6 · The paper itself

Abstract

Photoacoustic imaging is an increasingly popular method of exploring the tumour microenvironment, which can provide insight into tumour oxygenation status and potentially treatment response assessment. Currently, the measurements most commonly performed on such images are the mean and median of the pixel values of the tumour volumes of interest. We investigated expanding the set of measurements that can be extracted from these images by adding radiomic features. In particular, we found that Skewness was sensitive to differences between basal and luminal patient derived xenograft cancer models with an [Formula: see text] of 0.86, and that it was robust to variations in confounding factors such as reconstruction type and wavelength. We also built discriminant models with radiomic features that were correlated with the underlying tumour model and were independent from each other. We then ranked features by their importance in the model. Skewness was again found to be an important feature, as were 10th Percentile, Root Mean Squared, and several other texture-based features. In summary, this paper proposes a methodology to select radiomic features extracted from photoacoustic images that are robust to changes in acquisition and reconstruction parameters, and discusses features found to have discriminating power between the underlying tumour models in a pre-clinical dataset.

Indexed as

NeoplasmsPhotoacoustic TechniquesAnimalsDiagnostic ImagingDisease Models, AnimalHeterograftsHumansTumor Microenvironment

Identifiers

PMID36071117
PMCPMC9452574
OpenAlexW4294891972

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.